Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LDB1Q86U70 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LDB1Q86U70 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.1■□□□□ 0.97
LDB1Q86U70 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LDB1Q86U70 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LDB1Q86U70 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LDB1Q86U70 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.1■□□□□ 0.97
LDB1Q86U70 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LDB1Q86U70 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LDB1Q86U70 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LDB1Q86U70 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LDB1Q86U70 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LDB1Q86U70 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LDB1Q86U70 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.1■□□□□ 0.97
LDB1Q86U70 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
LDB1Q86U70 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LDB1Q86U70 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.09■□□□□ 0.97
LDB1Q86U70 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LDB1Q86U70 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LDB1Q86U70 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
LDB1Q86U70 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LDB1Q86U70 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.09■□□□□ 0.97
LDB1Q86U70 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LDB1Q86U70 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.09■□□□□ 0.97
LDB1Q86U70 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LDB1Q86U70 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LDB1Q86U70 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.09■□□□□ 0.97
LDB1Q86U70 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
LDB1Q86U70 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LDB1Q86U70 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LDB1Q86U70 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LDB1Q86U70 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.09■□□□□ 0.97
LDB1Q86U70 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
LDB1Q86U70 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.09■□□□□ 0.97
LDB1Q86U70 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
LDB1Q86U70 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.08■□□□□ 0.97
LDB1Q86U70 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LDB1Q86U70 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
LDB1Q86U70 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
LDB1Q86U70 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LDB1Q86U70 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LDB1Q86U70 ZNRF2P3-201ENST00000424200 374 ntBASIC21.08■□□□□ 0.97
LDB1Q86U70 TPRG1LP1-201ENST00000598702 760 ntBASIC21.08■□□□□ 0.97
LDB1Q86U70 AL358852.1-201ENST00000623174 1268 ntBASIC21.08■□□□□ 0.97
LDB1Q86U70 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
LDB1Q86U70 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
LDB1Q86U70 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
LDB1Q86U70 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.08■□□□□ 0.96
LDB1Q86U70 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LDB1Q86U70 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LDB1Q86U70 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
LDB1Q86U70 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.07■□□□□ 0.96
LDB1Q86U70 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LDB1Q86U70 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.07■□□□□ 0.96
LDB1Q86U70 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LDB1Q86U70 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
LDB1Q86U70 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
LDB1Q86U70 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LDB1Q86U70 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LDB1Q86U70 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.07■□□□□ 0.96
LDB1Q86U70 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.06■□□□□ 0.96
LDB1Q86U70 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
LDB1Q86U70 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
LDB1Q86U70 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.06■□□□□ 0.96
LDB1Q86U70 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDB1Q86U70 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LDB1Q86U70 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LDB1Q86U70 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LDB1Q86U70 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDB1Q86U70 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.06■□□□□ 0.96
LDB1Q86U70 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LDB1Q86U70 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LDB1Q86U70 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDB1Q86U70 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.06■□□□□ 0.96
LDB1Q86U70 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LDB1Q86U70 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
LDB1Q86U70 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.05■□□□□ 0.96
LDB1Q86U70 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.05■□□□□ 0.96
LDB1Q86U70 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
LDB1Q86U70 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
LDB1Q86U70 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.05■□□□□ 0.96
LDB1Q86U70 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
LDB1Q86U70 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.05■□□□□ 0.96
LDB1Q86U70 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.05■□□□□ 0.96
LDB1Q86U70 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LDB1Q86U70 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.05■□□□□ 0.96
LDB1Q86U70 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LDB1Q86U70 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LDB1Q86U70 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
LDB1Q86U70 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LDB1Q86U70 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LDB1Q86U70 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LDB1Q86U70 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.04■□□□□ 0.96
LDB1Q86U70 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.04■□□□□ 0.96
LDB1Q86U70 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LDB1Q86U70 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
LDB1Q86U70 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.04■□□□□ 0.96
LDB1Q86U70 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LDB1Q86U70 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
LDB1Q86U70 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms