Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDLIM3Q53GG5 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC17.43■□□□□ 0.38
PDLIM3Q53GG5 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC17.43■□□□□ 0.38
PDLIM3Q53GG5 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC17.43■□□□□ 0.38
PDLIM3Q53GG5 NKILA-201ENST00000613231 537 ntTSL 4 BASIC17.43■□□□□ 0.38
PDLIM3Q53GG5 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC17.43■□□□□ 0.38
PDLIM3Q53GG5 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC17.43■□□□□ 0.38
PDLIM3Q53GG5 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
PDLIM3Q53GG5 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
PDLIM3Q53GG5 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
PDLIM3Q53GG5 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
PDLIM3Q53GG5 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC17.43■□□□□ 0.38
PDLIM3Q53GG5 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC17.43■□□□□ 0.38
PDLIM3Q53GG5 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PDLIM3Q53GG5 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDLIM3Q53GG5 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 C17orf82-201ENST00000623772 1530 ntBASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 AL031602.1-201ENST00000633169 911 ntBASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDLIM3Q53GG5 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM3Q53GG5 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM3Q53GG5 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC17.41■□□□□ 0.38
PDLIM3Q53GG5 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
PDLIM3Q53GG5 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM3Q53GG5 VGF-203ENST00000611537 1622 ntTSL 5 BASIC17.41■□□□□ 0.38
PDLIM3Q53GG5 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM3Q53GG5 AL499627.2-201ENST00000606283 725 ntBASIC17.41■□□□□ 0.38
PDLIM3Q53GG5 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC17.41■□□□□ 0.38
PDLIM3Q53GG5 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC17.41■□□□□ 0.38
PDLIM3Q53GG5 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM3Q53GG5 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM3Q53GG5 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PDLIM3Q53GG5 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC17.41■□□□□ 0.38
PDLIM3Q53GG5 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
PDLIM3Q53GG5 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDLIM3Q53GG5 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDLIM3Q53GG5 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PDLIM3Q53GG5 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDLIM3Q53GG5 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDLIM3Q53GG5 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDLIM3Q53GG5 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.4■□□□□ 0.38
PDLIM3Q53GG5 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PDLIM3Q53GG5 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC17.4■□□□□ 0.38
PDLIM3Q53GG5 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDLIM3Q53GG5 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.4■□□□□ 0.38
PDLIM3Q53GG5 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PDLIM3Q53GG5 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC17.4■□□□□ 0.38
PDLIM3Q53GG5 TUB-203ENST00000534099 1759 ntTSL 2 BASIC17.4■□□□□ 0.38
PDLIM3Q53GG5 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC17.4■□□□□ 0.38
PDLIM3Q53GG5 PALM-208ENST00000592155 2272 ntTSL 4 BASIC17.4■□□□□ 0.38
PDLIM3Q53GG5 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PDLIM3Q53GG5 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDLIM3Q53GG5 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.38
PDLIM3Q53GG5 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PDLIM3Q53GG5 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PDLIM3Q53GG5 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PDLIM3Q53GG5 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC17.39■□□□□ 0.37
PDLIM3Q53GG5 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PDLIM3Q53GG5 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PDLIM3Q53GG5 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PDLIM3Q53GG5 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC17.39■□□□□ 0.37
PDLIM3Q53GG5 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC17.39■□□□□ 0.37
PDLIM3Q53GG5 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PDLIM3Q53GG5 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PDLIM3Q53GG5 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PDLIM3Q53GG5 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC17.39■□□□□ 0.37
PDLIM3Q53GG5 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PDLIM3Q53GG5 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC17.39■□□□□ 0.37
PDLIM3Q53GG5 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC17.39■□□□□ 0.37
PDLIM3Q53GG5 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PDLIM3Q53GG5 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC17.39■□□□□ 0.37
PDLIM3Q53GG5 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PDLIM3Q53GG5 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
PDLIM3Q53GG5 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PDLIM3Q53GG5 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
PDLIM3Q53GG5 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms