Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATF4P18848 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
ATF4P18848 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
ATF4P18848 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATF4P18848 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATF4P18848 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ATF4P18848 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATF4P18848 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
ATF4P18848 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATF4P18848 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
ATF4P18848 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC17.55■□□□□ 0.4
ATF4P18848 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC17.55■□□□□ 0.4
ATF4P18848 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
ATF4P18848 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATF4P18848 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATF4P18848 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATF4P18848 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATF4P18848 AC080038.3-201ENST00000623346 1952 ntBASIC17.55■□□□□ 0.4
ATF4P18848 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC17.55■□□□□ 0.4
ATF4P18848 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
ATF4P18848 AFG3L1P-217ENST00000557444 2447 ntBASIC17.55■□□□□ 0.4
ATF4P18848 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
ATF4P18848 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATF4P18848 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATF4P18848 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATF4P18848 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATF4P18848 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATF4P18848 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC17.54■□□□□ 0.4
ATF4P18848 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATF4P18848 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATF4P18848 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ATF4P18848 AL161729.1-201ENST00000604104 1402 ntBASIC17.54■□□□□ 0.4
ATF4P18848 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
ATF4P18848 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ATF4P18848 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.53■□□□□ 0.4
ATF4P18848 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATF4P18848 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.53■□□□□ 0.4
ATF4P18848 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATF4P18848 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ATF4P18848 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATF4P18848 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATF4P18848 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC17.53■□□□□ 0.4
ATF4P18848 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC17.53■□□□□ 0.4
ATF4P18848 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ATF4P18848 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATF4P18848 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATF4P18848 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
ATF4P18848 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC17.53■□□□□ 0.4
ATF4P18848 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATF4P18848 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ATF4P18848 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
ATF4P18848 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC17.52■□□□□ 0.4
ATF4P18848 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ATF4P18848 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
ATF4P18848 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ATF4P18848 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
ATF4P18848 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ATF4P18848 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
ATF4P18848 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ATF4P18848 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC17.52■□□□□ 0.4
ATF4P18848 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC17.52■□□□□ 0.4
ATF4P18848 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC17.52■□□□□ 0.4
ATF4P18848 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.52■□□□□ 0.4
ATF4P18848 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
ATF4P18848 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC17.52■□□□□ 0.4
ATF4P18848 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ATF4P18848 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
ATF4P18848 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.39
ATF4P18848 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
ATF4P18848 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC17.51■□□□□ 0.39
ATF4P18848 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ATF4P18848 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ATF4P18848 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ATF4P18848 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
ATF4P18848 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.51■□□□□ 0.39
ATF4P18848 AC139795.1-202ENST00000500444 432 ntBASIC17.51■□□□□ 0.39
ATF4P18848 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.51■□□□□ 0.39
ATF4P18848 BHLHE23-202ENST00000612929 1109 ntBASIC17.51■□□□□ 0.39
ATF4P18848 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.51■□□□□ 0.39
ATF4P18848 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
ATF4P18848 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ATF4P18848 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ATF4P18848 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ATF4P18848 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
ATF4P18848 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
ATF4P18848 AC098818.2-201ENST00000564925 2320 ntBASIC17.5■□□□□ 0.39
ATF4P18848 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
ATF4P18848 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ATF4P18848 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
ATF4P18848 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ATF4P18848 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ATF4P18848 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
ATF4P18848 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC17.5■□□□□ 0.39
ATF4P18848 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ATF4P18848 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
ATF4P18848 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ATF4P18848 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
ATF4P18848 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
ATF4P18848 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC17.5■□□□□ 0.39
ATF4P18848 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms