Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
RB1P06400 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC22.55■■□□□ 1.2
RB1P06400 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC22.55■■□□□ 1.2
RB1P06400 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
RB1P06400 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
RB1P06400 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
RB1P06400 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RB1P06400 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC22.54■■□□□ 1.2
RB1P06400 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC22.54■■□□□ 1.2
RB1P06400 AC008550.1-201ENST00000511500 884 ntBASIC22.54■■□□□ 1.2
RB1P06400 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
RB1P06400 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
RB1P06400 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC22.54■■□□□ 1.2
RB1P06400 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
RB1P06400 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
RB1P06400 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC22.54■■□□□ 1.2
RB1P06400 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
RB1P06400 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RB1P06400 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RB1P06400 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC22.53■■□□□ 1.2
RB1P06400 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC22.53■■□□□ 1.2
RB1P06400 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
RB1P06400 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC22.53■■□□□ 1.2
RB1P06400 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC22.53■■□□□ 1.2
RB1P06400 GATS-209ENST00000454084 1030 ntTSL 3 BASIC22.53■■□□□ 1.2
RB1P06400 USP36-216ENST00000589424 970 ntTSL 5 BASIC22.53■■□□□ 1.2
RB1P06400 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC22.53■■□□□ 1.2
RB1P06400 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
RB1P06400 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC22.53■■□□□ 1.2
RB1P06400 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
RB1P06400 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
RB1P06400 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
RB1P06400 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC22.52■■□□□ 1.2
RB1P06400 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC22.52■■□□□ 1.2
RB1P06400 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RB1P06400 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RB1P06400 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC22.52■■□□□ 1.2
RB1P06400 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC22.52■■□□□ 1.2
RB1P06400 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
RB1P06400 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC22.52■■□□□ 1.2
RB1P06400 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
RB1P06400 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC22.52■■□□□ 1.2
RB1P06400 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RB1P06400 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
RB1P06400 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC22.51■■□□□ 1.19
RB1P06400 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC22.51■■□□□ 1.19
RB1P06400 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RB1P06400 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC22.51■■□□□ 1.19
RB1P06400 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC22.51■■□□□ 1.19
RB1P06400 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC22.51■■□□□ 1.19
RB1P06400 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
RB1P06400 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RB1P06400 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC22.51■■□□□ 1.19
RB1P06400 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
RB1P06400 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
RB1P06400 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
RB1P06400 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
RB1P06400 RARG-204ENST00000543726 1779 ntTSL 2 BASIC22.5■■□□□ 1.19
RB1P06400 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC22.5■■□□□ 1.19
RB1P06400 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC22.5■■□□□ 1.19
RB1P06400 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
RB1P06400 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC22.5■■□□□ 1.19
RB1P06400 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
RB1P06400 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
RB1P06400 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC22.5■■□□□ 1.19
RB1P06400 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC22.5■■□□□ 1.19
RB1P06400 AC100791.3-201ENST00000617619 330 ntBASIC22.5■■□□□ 1.19
RB1P06400 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
RB1P06400 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
RB1P06400 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC22.49■■□□□ 1.19
RB1P06400 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
RB1P06400 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC22.49■■□□□ 1.19
RB1P06400 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC22.49■■□□□ 1.19
RB1P06400 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
RB1P06400 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC22.49■■□□□ 1.19
RB1P06400 AL359736.2-201ENST00000621992 437 ntBASIC22.49■■□□□ 1.19
RB1P06400 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
RB1P06400 MME-217ENST00000616757 1315 ntTSL 5 BASIC22.49■■□□□ 1.19
RB1P06400 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
RB1P06400 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
RB1P06400 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
RB1P06400 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
RB1P06400 PEX7-202ENST00000367756 680 ntTSL 3 BASIC22.48■■□□□ 1.19
RB1P06400 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
RB1P06400 NME6-213ENST00000451657 871 ntTSL 2 BASIC22.48■■□□□ 1.19
RB1P06400 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC22.48■■□□□ 1.19
RB1P06400 AC060766.5-201ENST00000590539 871 ntBASIC22.48■■□□□ 1.19
RB1P06400 FAM21FP-204ENST00000608637 956 ntBASIC22.48■■□□□ 1.19
RB1P06400 HLA-B-256ENST00000639848 1089 ntBASIC22.48■■□□□ 1.19
RB1P06400 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
RB1P06400 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
RB1P06400 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC22.47■■□□□ 1.19
RB1P06400 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
RB1P06400 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC22.47■■□□□ 1.19
RB1P06400 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
RB1P06400 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
RB1P06400 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC22.47■■□□□ 1.19
RB1P06400 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
RB1P06400 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC22.47■■□□□ 1.19
RB1P06400 MIR718-201ENST00000390190 70 ntBASIC22.47■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms