Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC13.39□□□□□ -0.27
APOBP04114 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC13.39□□□□□ -0.27
APOBP04114 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
APOBP04114 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC13.39□□□□□ -0.27
APOBP04114 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC13.39□□□□□ -0.27
APOBP04114 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
APOBP04114 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
APOBP04114 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
APOBP04114 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
APOBP04114 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
APOBP04114 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
APOBP04114 KLF2-202ENST00000592003 564 ntTSL 3 BASIC13.39□□□□□ -0.27
APOBP04114 EED-207ENST00000528180 1745 ntTSL 5 BASIC13.39□□□□□ -0.27
APOBP04114 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
APOBP04114 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
APOBP04114 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
APOBP04114 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC13.38□□□□□ -0.27
APOBP04114 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC13.38□□□□□ -0.27
APOBP04114 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC13.38□□□□□ -0.27
APOBP04114 LINC01960-201ENST00000563759 1884 ntBASIC13.38□□□□□ -0.27
APOBP04114 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC13.38□□□□□ -0.27
APOBP04114 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC13.38□□□□□ -0.27
APOBP04114 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
APOBP04114 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC13.38□□□□□ -0.27
APOBP04114 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
APOBP04114 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC13.38□□□□□ -0.27
APOBP04114 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
APOBP04114 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
APOBP04114 KRT16P2-201ENST00000414673 1423 ntBASIC13.38□□□□□ -0.27
APOBP04114 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
APOBP04114 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC13.37□□□□□ -0.27
APOBP04114 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
APOBP04114 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC13.37□□□□□ -0.27
APOBP04114 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC13.37□□□□□ -0.27
APOBP04114 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
APOBP04114 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC13.37□□□□□ -0.27
APOBP04114 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
APOBP04114 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC13.37□□□□□ -0.27
APOBP04114 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
APOBP04114 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC13.37□□□□□ -0.27
APOBP04114 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
APOBP04114 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
APOBP04114 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
APOBP04114 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC13.37□□□□□ -0.27
APOBP04114 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
APOBP04114 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC13.37□□□□□ -0.27
APOBP04114 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
APOBP04114 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
APOBP04114 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC13.37□□□□□ -0.27
APOBP04114 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC13.37□□□□□ -0.27
APOBP04114 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
APOBP04114 NME6-213ENST00000451657 871 ntTSL 2 BASIC13.37□□□□□ -0.27
APOBP04114 CD44-222ENST00000526025 1052 ntTSL 2 BASIC13.37□□□□□ -0.27
APOBP04114 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
APOBP04114 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
APOBP04114 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
APOBP04114 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
APOBP04114 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
APOBP04114 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
APOBP04114 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
APOBP04114 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
APOBP04114 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
APOBP04114 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
APOBP04114 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
APOBP04114 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
APOBP04114 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC13.36□□□□□ -0.27
APOBP04114 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC13.36□□□□□ -0.27
APOBP04114 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
APOBP04114 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC13.36□□□□□ -0.27
APOBP04114 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC13.36□□□□□ -0.27
APOBP04114 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
APOBP04114 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
APOBP04114 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC13.36□□□□□ -0.27
APOBP04114 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC13.36□□□□□ -0.27
APOBP04114 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
APOBP04114 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC13.36□□□□□ -0.27
APOBP04114 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC13.36□□□□□ -0.27
APOBP04114 SOX15-203ENST00000570788 1093 ntBASIC13.36□□□□□ -0.27
APOBP04114 RN7SL850P-201ENST00000579959 291 ntBASIC13.36□□□□□ -0.27
APOBP04114 AC069544.1-201ENST00000609399 999 ntBASIC13.36□□□□□ -0.27
APOBP04114 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
APOBP04114 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
APOBP04114 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
APOBP04114 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC13.35□□□□□ -0.27
APOBP04114 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
APOBP04114 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
APOBP04114 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
APOBP04114 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC13.35□□□□□ -0.27
APOBP04114 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
APOBP04114 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
APOBP04114 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
APOBP04114 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC13.35□□□□□ -0.27
APOBP04114 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
APOBP04114 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
APOBP04114 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
APOBP04114 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC13.35□□□□□ -0.27
APOBP04114 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
APOBP04114 HLA-B-256ENST00000639848 1089 ntBASIC13.35□□□□□ -0.27
APOBP04114 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
APOBP04114 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms