Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
ABCA1O95477 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA1O95477 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA1O95477 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA1O95477 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA1O95477 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA1O95477 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.67■□□□□ 0.42
ABCA1O95477 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC17.67■□□□□ 0.42
ABCA1O95477 MYC-209ENST00000641252 345 ntBASIC17.67■□□□□ 0.42
ABCA1O95477 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC17.67■□□□□ 0.42
ABCA1O95477 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA1O95477 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA1O95477 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC17.67■□□□□ 0.42
ABCA1O95477 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA1O95477 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ABCA1O95477 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC17.66■□□□□ 0.42
ABCA1O95477 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
ABCA1O95477 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ABCA1O95477 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ABCA1O95477 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
ABCA1O95477 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ABCA1O95477 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ABCA1O95477 AC007322.4-201ENST00000509611 723 ntBASIC17.66■□□□□ 0.42
ABCA1O95477 AC068473.5-201ENST00000616428 2072 ntBASIC17.66■□□□□ 0.42
ABCA1O95477 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
ABCA1O95477 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ABCA1O95477 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
ABCA1O95477 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC17.66■□□□□ 0.42
ABCA1O95477 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ABCA1O95477 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
ABCA1O95477 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
ABCA1O95477 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA1O95477 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA1O95477 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC17.65■□□□□ 0.42
ABCA1O95477 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA1O95477 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
ABCA1O95477 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA1O95477 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
ABCA1O95477 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
ABCA1O95477 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA1O95477 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA1O95477 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.65■□□□□ 0.42
ABCA1O95477 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
ABCA1O95477 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA1O95477 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA1O95477 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
ABCA1O95477 DUSP5P2-201ENST00000426873 1033 ntBASIC17.65■□□□□ 0.42
ABCA1O95477 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC17.65■□□□□ 0.42
ABCA1O95477 INO80E-214ENST00000620599 515 ntTSL 2 BASIC17.65■□□□□ 0.42
ABCA1O95477 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
ABCA1O95477 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
ABCA1O95477 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ABCA1O95477 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
ABCA1O95477 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
ABCA1O95477 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
ABCA1O95477 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC17.64■□□□□ 0.41
ABCA1O95477 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC17.64■□□□□ 0.41
ABCA1O95477 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ABCA1O95477 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ABCA1O95477 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ABCA1O95477 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC17.64■□□□□ 0.41
ABCA1O95477 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ABCA1O95477 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ABCA1O95477 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ABCA1O95477 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
ABCA1O95477 BMP1-204ENST00000397814 836 ntTSL 4 BASIC17.64■□□□□ 0.41
ABCA1O95477 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
ABCA1O95477 IRX5-204ENST00000560154 879 ntTSL 5 BASIC17.64■□□□□ 0.41
ABCA1O95477 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
ABCA1O95477 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC17.64■□□□□ 0.41
ABCA1O95477 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC17.64■□□□□ 0.41
ABCA1O95477 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC17.63■□□□□ 0.41
ABCA1O95477 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA1O95477 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA1O95477 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.63■□□□□ 0.41
ABCA1O95477 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA1O95477 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA1O95477 ESRRAP1-201ENST00000400596 1257 ntBASIC17.63■□□□□ 0.41
ABCA1O95477 AL512625.2-201ENST00000417533 625 ntBASIC17.63■□□□□ 0.41
ABCA1O95477 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC17.63■□□□□ 0.41
ABCA1O95477 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA1O95477 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
ABCA1O95477 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC17.63■□□□□ 0.41
ABCA1O95477 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC17.63■□□□□ 0.41
ABCA1O95477 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA1O95477 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA1O95477 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA1O95477 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA1O95477 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
ABCA1O95477 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA1O95477 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC17.63■□□□□ 0.41
ABCA1O95477 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ABCA1O95477 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.63■□□□□ 0.41
ABCA1O95477 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
ABCA1O95477 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC17.63■□□□□ 0.41
ABCA1O95477 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC17.63■□□□□ 0.41
ABCA1O95477 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
ABCA1O95477 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
ABCA1O95477 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC17.62■□□□□ 0.41
ABCA1O95477 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms