Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.67■□□□□ 0.9
SIX3O95343 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX3O95343 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SIX3O95343 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SIX3O95343 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SIX3O95343 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.66■□□□□ 0.9
SIX3O95343 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.66■□□□□ 0.9
SIX3O95343 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.66■□□□□ 0.9
SIX3O95343 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SIX3O95343 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SIX3O95343 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SIX3O95343 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SIX3O95343 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SIX3O95343 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
SIX3O95343 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.66■□□□□ 0.9
SIX3O95343 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SIX3O95343 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.65■□□□□ 0.9
SIX3O95343 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
SIX3O95343 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SIX3O95343 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
SIX3O95343 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SIX3O95343 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SIX3O95343 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.65■□□□□ 0.9
SIX3O95343 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.65■□□□□ 0.9
SIX3O95343 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.65■□□□□ 0.9
SIX3O95343 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.65■□□□□ 0.9
SIX3O95343 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
SIX3O95343 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SIX3O95343 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
SIX3O95343 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.65■□□□□ 0.9
SIX3O95343 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
SIX3O95343 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.9
SIX3O95343 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
SIX3O95343 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
SIX3O95343 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.64■□□□□ 0.9
SIX3O95343 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
SIX3O95343 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SIX3O95343 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SIX3O95343 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SIX3O95343 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.64■□□□□ 0.89
SIX3O95343 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SIX3O95343 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.64■□□□□ 0.89
SIX3O95343 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.64■□□□□ 0.89
SIX3O95343 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.64■□□□□ 0.89
SIX3O95343 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.64■□□□□ 0.89
SIX3O95343 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.64■□□□□ 0.89
SIX3O95343 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
SIX3O95343 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.64■□□□□ 0.89
SIX3O95343 AL049796.1-201ENST00000565336 1766 ntBASIC20.64■□□□□ 0.89
SIX3O95343 AL157384.1-201ENST00000445995 2473 ntBASIC20.64■□□□□ 0.89
SIX3O95343 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SIX3O95343 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.63■□□□□ 0.89
SIX3O95343 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.63■□□□□ 0.89
SIX3O95343 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SIX3O95343 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SIX3O95343 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
SIX3O95343 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX3O95343 TSPY26P-201ENST00000476365 1326 ntBASIC20.63■□□□□ 0.89
SIX3O95343 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
SIX3O95343 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX3O95343 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.63■□□□□ 0.89
SIX3O95343 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.63■□□□□ 0.89
SIX3O95343 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.63■□□□□ 0.89
SIX3O95343 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.63■□□□□ 0.89
SIX3O95343 AC106739.1-201ENST00000617035 715 ntBASIC20.63■□□□□ 0.89
SIX3O95343 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.63■□□□□ 0.89
SIX3O95343 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX3O95343 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SIX3O95343 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX3O95343 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX3O95343 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX3O95343 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
SIX3O95343 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SIX3O95343 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SIX3O95343 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.63■□□□□ 0.89
SIX3O95343 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX3O95343 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX3O95343 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX3O95343 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX3O95343 AC019069.1-201ENST00000610008 1333 ntBASIC20.62■□□□□ 0.89
SIX3O95343 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
SIX3O95343 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX3O95343 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
SIX3O95343 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX3O95343 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX3O95343 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
SIX3O95343 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.62■□□□□ 0.89
SIX3O95343 AP001330.3-201ENST00000520123 633 ntBASIC20.62■□□□□ 0.89
SIX3O95343 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.62■□□□□ 0.89
SIX3O95343 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.62■□□□□ 0.89
SIX3O95343 AC110285.6-201ENST00000617652 491 ntBASIC20.62■□□□□ 0.89
SIX3O95343 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
SIX3O95343 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.62■□□□□ 0.89
SIX3O95343 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
SIX3O95343 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX3O95343 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SIX3O95343 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SIX3O95343 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX3O95343 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SIX3O95343 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms