Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 RASA4CP-201ENST00000424092 1398 ntBASIC19.7■□□□□ 0.74
HMGN4O00479 AC055733.4-201ENST00000638462 1354 ntBASIC19.7■□□□□ 0.74
HMGN4O00479 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HMGN4O00479 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HMGN4O00479 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGN4O00479 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGN4O00479 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HMGN4O00479 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC19.69■□□□□ 0.74
HMGN4O00479 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.69■□□□□ 0.74
HMGN4O00479 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.69■□□□□ 0.74
HMGN4O00479 AF213884.3-201ENST00000563833 479 ntBASIC19.69■□□□□ 0.74
HMGN4O00479 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.69■□□□□ 0.74
HMGN4O00479 AL031432.3-201ENST00000607698 485 ntBASIC19.69■□□□□ 0.74
HMGN4O00479 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HMGN4O00479 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGN4O00479 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGN4O00479 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGN4O00479 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGN4O00479 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGN4O00479 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.68■□□□□ 0.74
HMGN4O00479 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
HMGN4O00479 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.68■□□□□ 0.74
HMGN4O00479 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGN4O00479 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGN4O00479 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
HMGN4O00479 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGN4O00479 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.68■□□□□ 0.74
HMGN4O00479 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
HMGN4O00479 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.68■□□□□ 0.74
HMGN4O00479 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.68■□□□□ 0.74
HMGN4O00479 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.68■□□□□ 0.74
HMGN4O00479 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGN4O00479 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HMGN4O00479 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HMGN4O00479 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HMGN4O00479 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HMGN4O00479 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HMGN4O00479 MIR572-201ENST00000384983 95 ntBASIC19.67■□□□□ 0.74
HMGN4O00479 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.67■□□□□ 0.74
HMGN4O00479 AL136967.2-201ENST00000623968 743 ntBASIC19.67■□□□□ 0.74
HMGN4O00479 AC005224.4-201ENST00000583262 1652 ntBASIC19.67■□□□□ 0.74
HMGN4O00479 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.67■□□□□ 0.74
HMGN4O00479 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
HMGN4O00479 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.67■□□□□ 0.74
HMGN4O00479 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HMGN4O00479 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
HMGN4O00479 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HMGN4O00479 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
HMGN4O00479 BX005040.4-201ENST00000637145 1518 ntBASIC19.66■□□□□ 0.74
HMGN4O00479 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.66■□□□□ 0.74
HMGN4O00479 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HMGN4O00479 PKD1P6-201ENST00000343738 4769 ntBASIC19.66■□□□□ 0.74
HMGN4O00479 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
HMGN4O00479 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.66■□□□□ 0.74
HMGN4O00479 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGN4O00479 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGN4O00479 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HMGN4O00479 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC19.66■□□□□ 0.74
HMGN4O00479 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGN4O00479 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGN4O00479 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.66■□□□□ 0.74
HMGN4O00479 NALT1-201ENST00000429224 738 ntTSL 5 BASIC19.66■□□□□ 0.74
HMGN4O00479 AC091305.1-201ENST00000479476 895 ntBASIC19.66■□□□□ 0.74
HMGN4O00479 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
HMGN4O00479 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGN4O00479 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
HMGN4O00479 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGN4O00479 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
HMGN4O00479 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
HMGN4O00479 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGN4O00479 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGN4O00479 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.65■□□□□ 0.74
HMGN4O00479 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.65■□□□□ 0.74
HMGN4O00479 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGN4O00479 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HMGN4O00479 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
HMGN4O00479 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.65■□□□□ 0.74
HMGN4O00479 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGN4O00479 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
HMGN4O00479 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.65■□□□□ 0.74
HMGN4O00479 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGN4O00479 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.65■□□□□ 0.74
HMGN4O00479 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGN4O00479 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.65■□□□□ 0.74
HMGN4O00479 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGN4O00479 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.65■□□□□ 0.74
HMGN4O00479 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
HMGN4O00479 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.64■□□□□ 0.74
HMGN4O00479 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGN4O00479 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGN4O00479 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.64■□□□□ 0.73
HMGN4O00479 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HMGN4O00479 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.64■□□□□ 0.73
HMGN4O00479 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.64■□□□□ 0.73
HMGN4O00479 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGN4O00479 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGN4O00479 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HMGN4O00479 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGN4O00479 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGN4O00479 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 13 ms