Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM49D1C9J1S8 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRIM49D1C9J1S8 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
TRIM49D1C9J1S8 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM49D1C9J1S8 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM49D1C9J1S8 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM49D1C9J1S8 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM49D1C9J1S8 FEM1AP1-201ENST00000431297 1995 ntBASIC21.16■□□□□ 0.98
TRIM49D1C9J1S8 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM49D1C9J1S8 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.16■□□□□ 0.98
TRIM49D1C9J1S8 GUSBP5-201ENST00000418136 578 ntBASIC21.16■□□□□ 0.98
TRIM49D1C9J1S8 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.16■□□□□ 0.98
TRIM49D1C9J1S8 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM49D1C9J1S8 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM49D1C9J1S8 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM49D1C9J1S8 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
TRIM49D1C9J1S8 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRIM49D1C9J1S8 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM49D1C9J1S8 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM49D1C9J1S8 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM49D1C9J1S8 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM49D1C9J1S8 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.15■□□□□ 0.98
TRIM49D1C9J1S8 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.15■□□□□ 0.98
TRIM49D1C9J1S8 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
TRIM49D1C9J1S8 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.15■□□□□ 0.98
TRIM49D1C9J1S8 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
TRIM49D1C9J1S8 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
TRIM49D1C9J1S8 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM49D1C9J1S8 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.15■□□□□ 0.98
TRIM49D1C9J1S8 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.15■□□□□ 0.98
TRIM49D1C9J1S8 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM49D1C9J1S8 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.15■□□□□ 0.98
TRIM49D1C9J1S8 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TRIM49D1C9J1S8 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TRIM49D1C9J1S8 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.14■□□□□ 0.98
TRIM49D1C9J1S8 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.14■□□□□ 0.98
TRIM49D1C9J1S8 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
TRIM49D1C9J1S8 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
TRIM49D1C9J1S8 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM49D1C9J1S8 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.14■□□□□ 0.97
TRIM49D1C9J1S8 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM49D1C9J1S8 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM49D1C9J1S8 SERBP1P1-201ENST00000396021 1160 ntBASIC21.14■□□□□ 0.97
TRIM49D1C9J1S8 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM49D1C9J1S8 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.14■□□□□ 0.97
TRIM49D1C9J1S8 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM49D1C9J1S8 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM49D1C9J1S8 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
TRIM49D1C9J1S8 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM49D1C9J1S8 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM49D1C9J1S8 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM49D1C9J1S8 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM49D1C9J1S8 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM49D1C9J1S8 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.13■□□□□ 0.97
TRIM49D1C9J1S8 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
TRIM49D1C9J1S8 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM49D1C9J1S8 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM49D1C9J1S8 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM49D1C9J1S8 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21.13■□□□□ 0.97
TRIM49D1C9J1S8 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM49D1C9J1S8 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM49D1C9J1S8 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM49D1C9J1S8 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
TRIM49D1C9J1S8 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
TRIM49D1C9J1S8 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
TRIM49D1C9J1S8 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
TRIM49D1C9J1S8 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM49D1C9J1S8 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM49D1C9J1S8 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM49D1C9J1S8 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM49D1C9J1S8 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 AP006587.3-201ENST00000525742 1516 ntBASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 SLC47A1P1-202ENST00000449666 945 ntBASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 AP005435.1-201ENST00000529293 1178 ntBASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 AL138724.1-201ENST00000606771 1088 ntBASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
TRIM49D1C9J1S8 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM49D1C9J1S8 SYT6-210ENST00000641643 1587 ntBASIC21.1■□□□□ 0.97
TRIM49D1C9J1S8 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
TRIM49D1C9J1S8 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM49D1C9J1S8 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms