Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC163A0A0D9SF12 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
CCDC163A0A0D9SF12 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
CCDC163A0A0D9SF12 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.1■□□□□ 0.97
CCDC163A0A0D9SF12 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC163A0A0D9SF12 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.1■□□□□ 0.97
CCDC163A0A0D9SF12 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC163A0A0D9SF12 GATS-209ENST00000454084 1030 ntTSL 3 BASIC21.1■□□□□ 0.97
CCDC163A0A0D9SF12 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.1■□□□□ 0.97
CCDC163A0A0D9SF12 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC21.1■□□□□ 0.97
CCDC163A0A0D9SF12 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC163A0A0D9SF12 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC163A0A0D9SF12 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 MME-217ENST00000616757 1315 ntTSL 5 BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 MIR718-201ENST00000390190 70 ntBASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 AC060766.5-201ENST00000590539 871 ntBASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 HLA-B-256ENST00000639848 1089 ntBASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC163A0A0D9SF12 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC163A0A0D9SF12 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC163A0A0D9SF12 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC163A0A0D9SF12 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC21.08■□□□□ 0.97
CCDC163A0A0D9SF12 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC163A0A0D9SF12 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.08■□□□□ 0.97
CCDC163A0A0D9SF12 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
CCDC163A0A0D9SF12 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC163A0A0D9SF12 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC163A0A0D9SF12 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.08■□□□□ 0.97
CCDC163A0A0D9SF12 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC163A0A0D9SF12 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC163A0A0D9SF12 FAM21FP-204ENST00000608637 956 ntBASIC21.08■□□□□ 0.97
CCDC163A0A0D9SF12 AL359736.2-201ENST00000621992 437 ntBASIC21.08■□□□□ 0.97
CCDC163A0A0D9SF12 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC163A0A0D9SF12 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC163A0A0D9SF12 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.08■□□□□ 0.96
CCDC163A0A0D9SF12 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC163A0A0D9SF12 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.07■□□□□ 0.96
CCDC163A0A0D9SF12 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC163A0A0D9SF12 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC163A0A0D9SF12 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC163A0A0D9SF12 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC163A0A0D9SF12 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC163A0A0D9SF12 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC163A0A0D9SF12 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CCDC163A0A0D9SF12 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC21.07■□□□□ 0.96
CCDC163A0A0D9SF12 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC163A0A0D9SF12 RHOD-202ENST00000532559 538 ntTSL 3 BASIC21.07■□□□□ 0.96
CCDC163A0A0D9SF12 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC21.07■□□□□ 0.96
CCDC163A0A0D9SF12 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC21.07■□□□□ 0.96
CCDC163A0A0D9SF12 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC163A0A0D9SF12 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
CCDC163A0A0D9SF12 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC163A0A0D9SF12 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC163A0A0D9SF12 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC163A0A0D9SF12 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC21.06■□□□□ 0.96
CCDC163A0A0D9SF12 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC163A0A0D9SF12 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC163A0A0D9SF12 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC163A0A0D9SF12 AC008403.3-201ENST00000598924 454 ntBASIC21.06■□□□□ 0.96
CCDC163A0A0D9SF12 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC163A0A0D9SF12 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
CCDC163A0A0D9SF12 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC163A0A0D9SF12 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC163A0A0D9SF12 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC163A0A0D9SF12 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC163A0A0D9SF12 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC163A0A0D9SF12 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC163A0A0D9SF12 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
CCDC163A0A0D9SF12 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC163A0A0D9SF12 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC21.05■□□□□ 0.96
CCDC163A0A0D9SF12 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC163A0A0D9SF12 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC163A0A0D9SF12 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC163A0A0D9SF12 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CCDC163A0A0D9SF12 PEX7-202ENST00000367756 680 ntTSL 3 BASIC21.04■□□□□ 0.96
CCDC163A0A0D9SF12 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC163A0A0D9SF12 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC163A0A0D9SF12 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CCDC163A0A0D9SF12 RNF121-214ENST00000533380 870 ntTSL 3 BASIC21.04■□□□□ 0.96
CCDC163A0A0D9SF12 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms