Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
TRAV40A0A0B4J280 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV40A0A0B4J280 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV40A0A0B4J280 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV40A0A0B4J280 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV40A0A0B4J280 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV40A0A0B4J280 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV40A0A0B4J280 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
TRAV40A0A0B4J280 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV40A0A0B4J280 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAV40A0A0B4J280 SLC7A5P2-201ENST00000553010 536 ntBASIC17.24■□□□□ 0.35
TRAV40A0A0B4J280 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAV40A0A0B4J280 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC17.24■□□□□ 0.35
TRAV40A0A0B4J280 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV40A0A0B4J280 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV40A0A0B4J280 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC17.24■□□□□ 0.35
TRAV40A0A0B4J280 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV40A0A0B4J280 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV40A0A0B4J280 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV40A0A0B4J280 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV40A0A0B4J280 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRAV40A0A0B4J280 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC17.24■□□□□ 0.35
TRAV40A0A0B4J280 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
TRAV40A0A0B4J280 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV40A0A0B4J280 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV40A0A0B4J280 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC17.23■□□□□ 0.35
TRAV40A0A0B4J280 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV40A0A0B4J280 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV40A0A0B4J280 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
TRAV40A0A0B4J280 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV40A0A0B4J280 CNN2P6-201ENST00000439038 900 ntBASIC17.23■□□□□ 0.35
TRAV40A0A0B4J280 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
TRAV40A0A0B4J280 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAV40A0A0B4J280 RNF146-206ENST00000480444 843 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAV40A0A0B4J280 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC17.23■□□□□ 0.35
TRAV40A0A0B4J280 EMC9-206ENST00000560403 872 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAV40A0A0B4J280 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV40A0A0B4J280 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC17.23■□□□□ 0.35
TRAV40A0A0B4J280 AC013268.1-206ENST00000638368 961 ntBASIC17.23■□□□□ 0.35
TRAV40A0A0B4J280 AC112229.1-201ENST00000639295 961 ntBASIC17.23■□□□□ 0.35
TRAV40A0A0B4J280 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV40A0A0B4J280 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC17.23■□□□□ 0.35
TRAV40A0A0B4J280 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV40A0A0B4J280 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRAV40A0A0B4J280 AC127496.7-201ENST00000625110 1798 ntBASIC17.23■□□□□ 0.35
TRAV40A0A0B4J280 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV40A0A0B4J280 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV40A0A0B4J280 AC092053.2-201ENST00000640557 1818 ntBASIC17.22■□□□□ 0.35
TRAV40A0A0B4J280 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
TRAV40A0A0B4J280 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC17.22■□□□□ 0.35
TRAV40A0A0B4J280 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV40A0A0B4J280 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC17.22■□□□□ 0.35
TRAV40A0A0B4J280 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
TRAV40A0A0B4J280 PARP1-210ENST00000629232 477 ntTSL 5 BASIC17.22■□□□□ 0.35
TRAV40A0A0B4J280 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV40A0A0B4J280 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV40A0A0B4J280 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV40A0A0B4J280 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC17.22■□□□□ 0.35
TRAV40A0A0B4J280 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV40A0A0B4J280 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
TRAV40A0A0B4J280 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV40A0A0B4J280 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC17.21■□□□□ 0.35
TRAV40A0A0B4J280 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
TRAV40A0A0B4J280 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV40A0A0B4J280 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC17.21■□□□□ 0.35
TRAV40A0A0B4J280 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
TRAV40A0A0B4J280 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV40A0A0B4J280 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC17.21■□□□□ 0.35
TRAV40A0A0B4J280 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC17.21■□□□□ 0.35
TRAV40A0A0B4J280 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV40A0A0B4J280 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV40A0A0B4J280 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
TRAV40A0A0B4J280 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC17.21■□□□□ 0.35
TRAV40A0A0B4J280 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC17.21■□□□□ 0.35
TRAV40A0A0B4J280 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV40A0A0B4J280 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV40A0A0B4J280 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
TRAV40A0A0B4J280 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC17.21■□□□□ 0.35
TRAV40A0A0B4J280 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
TRAV40A0A0B4J280 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV40A0A0B4J280 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC17.2■□□□□ 0.34
TRAV40A0A0B4J280 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV40A0A0B4J280 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV40A0A0B4J280 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV40A0A0B4J280 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV40A0A0B4J280 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV40A0A0B4J280 SLC29A4P1-201ENST00000398760 971 ntBASIC17.2■□□□□ 0.34
TRAV40A0A0B4J280 POU5F1P4-201ENST00000413175 1085 ntBASIC17.2■□□□□ 0.34
TRAV40A0A0B4J280 AC083906.2-201ENST00000511578 360 ntBASIC17.2■□□□□ 0.34
TRAV40A0A0B4J280 SLC7A5P1-201ENST00000568957 537 ntBASIC17.2■□□□□ 0.34
TRAV40A0A0B4J280 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC17.2■□□□□ 0.34
TRAV40A0A0B4J280 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
TRAV40A0A0B4J280 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
TRAV40A0A0B4J280 AC003102.1-202ENST00000563394 1796 ntBASIC17.2■□□□□ 0.34
TRAV40A0A0B4J280 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV40A0A0B4J280 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV40A0A0B4J280 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC17.2■□□□□ 0.34
TRAV40A0A0B4J280 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
TRAV40A0A0B4J280 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms