Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHA3Q9Y5H8 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHA3Q9Y5H8 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHA3Q9Y5H8 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHA3Q9Y5H8 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC22.16■■□□□ 1.14
PCDHA3Q9Y5H8 MIR4767-201ENST00000582827 78 ntBASIC22.16■■□□□ 1.14
PCDHA3Q9Y5H8 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHA3Q9Y5H8 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHA3Q9Y5H8 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHA3Q9Y5H8 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHA3Q9Y5H8 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC22.16■■□□□ 1.14
PCDHA3Q9Y5H8 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
PCDHA3Q9Y5H8 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
PCDHA3Q9Y5H8 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHA3Q9Y5H8 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHA3Q9Y5H8 UNC93B3-201ENST00000308076 687 ntBASIC22.15■■□□□ 1.14
PCDHA3Q9Y5H8 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHA3Q9Y5H8 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHA3Q9Y5H8 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHA3Q9Y5H8 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC22.15■■□□□ 1.14
PCDHA3Q9Y5H8 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHA3Q9Y5H8 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHA3Q9Y5H8 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHA3Q9Y5H8 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
PCDHA3Q9Y5H8 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
PCDHA3Q9Y5H8 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
PCDHA3Q9Y5H8 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
PCDHA3Q9Y5H8 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
PCDHA3Q9Y5H8 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PCDHA3Q9Y5H8 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
PCDHA3Q9Y5H8 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC22.14■■□□□ 1.13
PCDHA3Q9Y5H8 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC22.14■■□□□ 1.13
PCDHA3Q9Y5H8 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
PCDHA3Q9Y5H8 AC233992.3-201ENST00000607491 485 ntBASIC22.14■■□□□ 1.13
PCDHA3Q9Y5H8 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
PCDHA3Q9Y5H8 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC22.14■■□□□ 1.13
PCDHA3Q9Y5H8 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC22.14■■□□□ 1.13
PCDHA3Q9Y5H8 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
PCDHA3Q9Y5H8 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHA3Q9Y5H8 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHA3Q9Y5H8 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHA3Q9Y5H8 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHA3Q9Y5H8 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHA3Q9Y5H8 AL157384.1-201ENST00000445995 2473 ntBASIC22.13■■□□□ 1.13
PCDHA3Q9Y5H8 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHA3Q9Y5H8 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHA3Q9Y5H8 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHA3Q9Y5H8 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHA3Q9Y5H8 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC22.13■■□□□ 1.13
PCDHA3Q9Y5H8 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHA3Q9Y5H8 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHA3Q9Y5H8 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC22.13■■□□□ 1.13
PCDHA3Q9Y5H8 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
PCDHA3Q9Y5H8 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHA3Q9Y5H8 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC22.12■■□□□ 1.13
PCDHA3Q9Y5H8 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
PCDHA3Q9Y5H8 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
PCDHA3Q9Y5H8 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHA3Q9Y5H8 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHA3Q9Y5H8 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC22.12■■□□□ 1.13
PCDHA3Q9Y5H8 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHA3Q9Y5H8 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
PCDHA3Q9Y5H8 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC22.12■■□□□ 1.13
PCDHA3Q9Y5H8 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC22.12■■□□□ 1.13
PCDHA3Q9Y5H8 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
PCDHA3Q9Y5H8 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHA3Q9Y5H8 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHA3Q9Y5H8 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHA3Q9Y5H8 ASL-203ENST00000380839 1765 ntTSL 5 BASIC22.12■■□□□ 1.13
PCDHA3Q9Y5H8 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
PCDHA3Q9Y5H8 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHA3Q9Y5H8 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHA3Q9Y5H8 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
PCDHA3Q9Y5H8 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHA3Q9Y5H8 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHA3Q9Y5H8 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHA3Q9Y5H8 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHA3Q9Y5H8 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHA3Q9Y5H8 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC22.11■■□□□ 1.13
PCDHA3Q9Y5H8 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC22.11■■□□□ 1.13
PCDHA3Q9Y5H8 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHA3Q9Y5H8 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHA3Q9Y5H8 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHA3Q9Y5H8 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
PCDHA3Q9Y5H8 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHA3Q9Y5H8 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHA3Q9Y5H8 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
PCDHA3Q9Y5H8 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PCDHA3Q9Y5H8 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC22.11■■□□□ 1.13
PCDHA3Q9Y5H8 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHA3Q9Y5H8 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC22.1■■□□□ 1.13
PCDHA3Q9Y5H8 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHA3Q9Y5H8 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHA3Q9Y5H8 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHA3Q9Y5H8 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHA3Q9Y5H8 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHA3Q9Y5H8 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC22.1■■□□□ 1.13
PCDHA3Q9Y5H8 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
PCDHA3Q9Y5H8 AC024257.2-201ENST00000549699 147 ntBASIC22.1■■□□□ 1.13
PCDHA3Q9Y5H8 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC22.1■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms