Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AC027682.1-201ENST00000562846 899 ntBASIC18.91■□□□□ 0.62
VSX1Q9NZR4 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC18.91■□□□□ 0.62
VSX1Q9NZR4 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VSX1Q9NZR4 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC18.91■□□□□ 0.62
VSX1Q9NZR4 AC008764.7-201ENST00000593779 1081 ntBASIC18.91■□□□□ 0.62
VSX1Q9NZR4 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VSX1Q9NZR4 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.91■□□□□ 0.62
VSX1Q9NZR4 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VSX1Q9NZR4 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC18.91■□□□□ 0.62
VSX1Q9NZR4 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.91■□□□□ 0.62
VSX1Q9NZR4 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VSX1Q9NZR4 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VSX1Q9NZR4 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VSX1Q9NZR4 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
VSX1Q9NZR4 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VSX1Q9NZR4 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VSX1Q9NZR4 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
VSX1Q9NZR4 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC18.9■□□□□ 0.62
VSX1Q9NZR4 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VSX1Q9NZR4 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VSX1Q9NZR4 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC18.9■□□□□ 0.62
VSX1Q9NZR4 AC099791.1-201ENST00000416440 715 ntBASIC18.9■□□□□ 0.62
VSX1Q9NZR4 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC18.9■□□□□ 0.62
VSX1Q9NZR4 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC18.9■□□□□ 0.62
VSX1Q9NZR4 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VSX1Q9NZR4 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VSX1Q9NZR4 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VSX1Q9NZR4 ASL-203ENST00000380839 1765 ntTSL 5 BASIC18.9■□□□□ 0.62
VSX1Q9NZR4 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
VSX1Q9NZR4 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
VSX1Q9NZR4 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VSX1Q9NZR4 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
VSX1Q9NZR4 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VSX1Q9NZR4 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VSX1Q9NZR4 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.62
VSX1Q9NZR4 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
VSX1Q9NZR4 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VSX1Q9NZR4 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VSX1Q9NZR4 EDA-201ENST00000338901 1233 ntBASIC18.89■□□□□ 0.61
VSX1Q9NZR4 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC18.89■□□□□ 0.61
VSX1Q9NZR4 GRAMD4P4-201ENST00000613563 1115 ntBASIC18.89■□□□□ 0.61
VSX1Q9NZR4 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC18.89■□□□□ 0.61
VSX1Q9NZR4 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VSX1Q9NZR4 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VSX1Q9NZR4 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.89■□□□□ 0.61
VSX1Q9NZR4 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC18.89■□□□□ 0.61
VSX1Q9NZR4 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC18.89■□□□□ 0.61
VSX1Q9NZR4 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VSX1Q9NZR4 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VSX1Q9NZR4 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VSX1Q9NZR4 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.88■□□□□ 0.61
VSX1Q9NZR4 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VSX1Q9NZR4 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VSX1Q9NZR4 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VSX1Q9NZR4 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VSX1Q9NZR4 LHPP-203ENST00000392757 840 ntTSL 3 BASIC18.88■□□□□ 0.61
VSX1Q9NZR4 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC18.88■□□□□ 0.61
VSX1Q9NZR4 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC18.88■□□□□ 0.61
VSX1Q9NZR4 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
VSX1Q9NZR4 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC18.88■□□□□ 0.61
VSX1Q9NZR4 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VSX1Q9NZR4 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
VSX1Q9NZR4 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VSX1Q9NZR4 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VSX1Q9NZR4 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VSX1Q9NZR4 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
VSX1Q9NZR4 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VSX1Q9NZR4 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VSX1Q9NZR4 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VSX1Q9NZR4 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VSX1Q9NZR4 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VSX1Q9NZR4 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
VSX1Q9NZR4 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC18.87■□□□□ 0.61
VSX1Q9NZR4 AC009237.3-201ENST00000393279 1427 ntBASIC18.87■□□□□ 0.61
VSX1Q9NZR4 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VSX1Q9NZR4 GRAMD4P2-201ENST00000423297 1097 ntBASIC18.87■□□□□ 0.61
VSX1Q9NZR4 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC18.87■□□□□ 0.61
VSX1Q9NZR4 DYM-203ENST00000442713 2147 ntTSL 2 BASIC18.87■□□□□ 0.61
VSX1Q9NZR4 AP001330.3-201ENST00000520123 633 ntBASIC18.87■□□□□ 0.61
VSX1Q9NZR4 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VSX1Q9NZR4 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
VSX1Q9NZR4 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
VSX1Q9NZR4 AL024507.2-201ENST00000606070 2574 ntBASIC18.87■□□□□ 0.61
VSX1Q9NZR4 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC18.86■□□□□ 0.61
VSX1Q9NZR4 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VSX1Q9NZR4 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VSX1Q9NZR4 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VSX1Q9NZR4 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VSX1Q9NZR4 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VSX1Q9NZR4 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VSX1Q9NZR4 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VSX1Q9NZR4 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC18.86■□□□□ 0.61
VSX1Q9NZR4 TSPY26P-201ENST00000476365 1326 ntBASIC18.86■□□□□ 0.61
VSX1Q9NZR4 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VSX1Q9NZR4 AF106564.1-201ENST00000607058 2553 ntBASIC18.86■□□□□ 0.61
VSX1Q9NZR4 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC18.86■□□□□ 0.61
VSX1Q9NZR4 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.86■□□□□ 0.61
VSX1Q9NZR4 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VSX1Q9NZR4 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
VSX1Q9NZR4 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms