Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.3■□□□□ 0.84
BRF2Q9HAW0 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
BRF2Q9HAW0 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.3■□□□□ 0.84
BRF2Q9HAW0 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
BRF2Q9HAW0 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
BRF2Q9HAW0 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.3■□□□□ 0.84
BRF2Q9HAW0 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
BRF2Q9HAW0 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 AC005229.4-201ENST00000610085 2198 ntBASIC20.29■□□□□ 0.84
BRF2Q9HAW0 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.29■□□□□ 0.84
BRF2Q9HAW0 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
BRF2Q9HAW0 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
BRF2Q9HAW0 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF2Q9HAW0 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.28■□□□□ 0.84
BRF2Q9HAW0 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF2Q9HAW0 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF2Q9HAW0 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF2Q9HAW0 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.28■□□□□ 0.84
BRF2Q9HAW0 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.28■□□□□ 0.84
BRF2Q9HAW0 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.28■□□□□ 0.84
BRF2Q9HAW0 AC012414.1-201ENST00000556676 535 ntBASIC20.28■□□□□ 0.84
BRF2Q9HAW0 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
BRF2Q9HAW0 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF2Q9HAW0 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF2Q9HAW0 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.28■□□□□ 0.84
BRF2Q9HAW0 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF2Q9HAW0 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BRF2Q9HAW0 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.27■□□□□ 0.84
BRF2Q9HAW0 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
BRF2Q9HAW0 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRF2Q9HAW0 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
BRF2Q9HAW0 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.27■□□□□ 0.84
BRF2Q9HAW0 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRF2Q9HAW0 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRF2Q9HAW0 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.27■□□□□ 0.84
BRF2Q9HAW0 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.27■□□□□ 0.84
BRF2Q9HAW0 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRF2Q9HAW0 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRF2Q9HAW0 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRF2Q9HAW0 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.27■□□□□ 0.84
BRF2Q9HAW0 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRF2Q9HAW0 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.27■□□□□ 0.84
BRF2Q9HAW0 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRF2Q9HAW0 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.27■□□□□ 0.84
BRF2Q9HAW0 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.27■□□□□ 0.84
BRF2Q9HAW0 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.27■□□□□ 0.84
BRF2Q9HAW0 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
BRF2Q9HAW0 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
BRF2Q9HAW0 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
BRF2Q9HAW0 AL024507.2-201ENST00000606070 2574 ntBASIC20.27■□□□□ 0.83
BRF2Q9HAW0 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
BRF2Q9HAW0 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
BRF2Q9HAW0 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BRF2Q9HAW0 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BRF2Q9HAW0 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BRF2Q9HAW0 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BRF2Q9HAW0 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.26■□□□□ 0.83
BRF2Q9HAW0 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.26■□□□□ 0.83
BRF2Q9HAW0 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
BRF2Q9HAW0 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
BRF2Q9HAW0 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.25■□□□□ 0.83
BRF2Q9HAW0 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
BRF2Q9HAW0 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
BRF2Q9HAW0 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.25■□□□□ 0.83
BRF2Q9HAW0 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.25■□□□□ 0.83
BRF2Q9HAW0 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.25■□□□□ 0.83
BRF2Q9HAW0 AC142381.2-201ENST00000566120 298 ntBASIC20.25■□□□□ 0.83
BRF2Q9HAW0 AL354811.1-201ENST00000610286 706 ntBASIC20.25■□□□□ 0.83
BRF2Q9HAW0 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
BRF2Q9HAW0 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
BRF2Q9HAW0 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.25■□□□□ 0.83
BRF2Q9HAW0 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
BRF2Q9HAW0 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
BRF2Q9HAW0 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
BRF2Q9HAW0 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BRF2Q9HAW0 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms