Protein–RNA interactions for Protein: Q9H0F5

RNF38, E3 ubiquitin-protein ligase RNF38, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38Q9H0F5 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
RNF38Q9H0F5 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC22.07■■□□□ 1.12
RNF38Q9H0F5 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
RNF38Q9H0F5 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC22.07■■□□□ 1.12
RNF38Q9H0F5 AC010536.3-201ENST00000620306 533 ntBASIC22.07■■□□□ 1.12
RNF38Q9H0F5 PARP1-210ENST00000629232 477 ntTSL 5 BASIC22.07■■□□□ 1.12
RNF38Q9H0F5 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
RNF38Q9H0F5 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC22.07■■□□□ 1.12
RNF38Q9H0F5 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC22.07■■□□□ 1.12
RNF38Q9H0F5 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC22.07■■□□□ 1.12
RNF38Q9H0F5 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
RNF38Q9H0F5 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
RNF38Q9H0F5 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RNF38Q9H0F5 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RNF38Q9H0F5 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RNF38Q9H0F5 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
RNF38Q9H0F5 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RNF38Q9H0F5 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RNF38Q9H0F5 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC22.06■■□□□ 1.12
RNF38Q9H0F5 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC22.06■■□□□ 1.12
RNF38Q9H0F5 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC22.06■■□□□ 1.12
RNF38Q9H0F5 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC22.06■■□□□ 1.12
RNF38Q9H0F5 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC22.06■■□□□ 1.12
RNF38Q9H0F5 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC22.06■■□□□ 1.12
RNF38Q9H0F5 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC22.06■■□□□ 1.12
RNF38Q9H0F5 AL109923.1-201ENST00000618799 583 ntBASIC22.06■■□□□ 1.12
RNF38Q9H0F5 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC22.06■■□□□ 1.12
RNF38Q9H0F5 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RNF38Q9H0F5 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC22.06■■□□□ 1.12
RNF38Q9H0F5 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RNF38Q9H0F5 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
RNF38Q9H0F5 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RNF38Q9H0F5 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RNF38Q9H0F5 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RNF38Q9H0F5 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RNF38Q9H0F5 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
RNF38Q9H0F5 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
RNF38Q9H0F5 UQCRFS1P1-201ENST00000435169 820 ntBASIC22.05■■□□□ 1.12
RNF38Q9H0F5 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC22.05■■□□□ 1.12
RNF38Q9H0F5 SLC7A5P1-201ENST00000568957 537 ntBASIC22.05■■□□□ 1.12
RNF38Q9H0F5 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
RNF38Q9H0F5 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
RNF38Q9H0F5 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC22.05■■□□□ 1.12
RNF38Q9H0F5 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC22.05■■□□□ 1.12
RNF38Q9H0F5 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
RNF38Q9H0F5 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
RNF38Q9H0F5 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC22.05■■□□□ 1.12
RNF38Q9H0F5 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC22.04■■□□□ 1.12
RNF38Q9H0F5 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC22.04■■□□□ 1.12
RNF38Q9H0F5 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
RNF38Q9H0F5 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
RNF38Q9H0F5 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC22.04■■□□□ 1.12
RNF38Q9H0F5 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC22.04■■□□□ 1.12
RNF38Q9H0F5 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC22.04■■□□□ 1.12
RNF38Q9H0F5 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC22.04■■□□□ 1.12
RNF38Q9H0F5 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
RNF38Q9H0F5 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
RNF38Q9H0F5 AC005181.1-201ENST00000604782 1256 ntBASIC22.04■■□□□ 1.12
RNF38Q9H0F5 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
RNF38Q9H0F5 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
RNF38Q9H0F5 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
RNF38Q9H0F5 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
RNF38Q9H0F5 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC22.04■■□□□ 1.12
RNF38Q9H0F5 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RNF38Q9H0F5 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
RNF38Q9H0F5 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
RNF38Q9H0F5 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
RNF38Q9H0F5 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RNF38Q9H0F5 GPX1P1-201ENST00000388829 606 ntBASIC22.03■■□□□ 1.12
RNF38Q9H0F5 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC22.03■■□□□ 1.12
RNF38Q9H0F5 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC22.03■■□□□ 1.12
RNF38Q9H0F5 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC22.03■■□□□ 1.12
RNF38Q9H0F5 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC22.03■■□□□ 1.12
RNF38Q9H0F5 EMC9-206ENST00000560403 872 ntTSL 2 BASIC22.03■■□□□ 1.12
RNF38Q9H0F5 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC22.03■■□□□ 1.12
RNF38Q9H0F5 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RNF38Q9H0F5 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
RNF38Q9H0F5 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
RNF38Q9H0F5 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC22.03■■□□□ 1.12
RNF38Q9H0F5 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC22.03■■□□□ 1.12
RNF38Q9H0F5 RARG-204ENST00000543726 1779 ntTSL 2 BASIC22.02■■□□□ 1.12
RNF38Q9H0F5 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
RNF38Q9H0F5 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
RNF38Q9H0F5 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
RNF38Q9H0F5 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
RNF38Q9H0F5 AC083906.2-201ENST00000511578 360 ntBASIC22.02■■□□□ 1.12
RNF38Q9H0F5 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC22.02■■□□□ 1.12
RNF38Q9H0F5 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC22.02■■□□□ 1.12
RNF38Q9H0F5 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
RNF38Q9H0F5 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RNF38Q9H0F5 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC22.01■■□□□ 1.11
RNF38Q9H0F5 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
RNF38Q9H0F5 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RNF38Q9H0F5 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
RNF38Q9H0F5 TERF1P5-201ENST00000477545 1207 ntBASIC22.01■■□□□ 1.11
RNF38Q9H0F5 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC22.01■■□□□ 1.11
RNF38Q9H0F5 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
RNF38Q9H0F5 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
RNF38Q9H0F5 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC22.01■■□□□ 1.11
RNF38Q9H0F5 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms