Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.01■□□□□ 0.79
PTCHD1Q96NR3 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
PTCHD1Q96NR3 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
PTCHD1Q96NR3 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PTCHD1Q96NR3 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTCHD1Q96NR3 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
PTCHD1Q96NR3 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20■□□□□ 0.79
PTCHD1Q96NR3 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
PTCHD1Q96NR3 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20■□□□□ 0.79
PTCHD1Q96NR3 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20■□□□□ 0.79
PTCHD1Q96NR3 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20■□□□□ 0.79
PTCHD1Q96NR3 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20■□□□□ 0.79
PTCHD1Q96NR3 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20■□□□□ 0.79
PTCHD1Q96NR3 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20■□□□□ 0.79
PTCHD1Q96NR3 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20■□□□□ 0.79
PTCHD1Q96NR3 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20■□□□□ 0.79
PTCHD1Q96NR3 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20■□□□□ 0.79
PTCHD1Q96NR3 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
PTCHD1Q96NR3 FAM99A-202ENST00000538190 1989 ntBASIC20■□□□□ 0.79
PTCHD1Q96NR3 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20■□□□□ 0.79
PTCHD1Q96NR3 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20■□□□□ 0.79
PTCHD1Q96NR3 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
PTCHD1Q96NR3 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PTCHD1Q96NR3 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20■□□□□ 0.79
PTCHD1Q96NR3 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20■□□□□ 0.79
PTCHD1Q96NR3 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.99■□□□□ 0.79
PTCHD1Q96NR3 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
PTCHD1Q96NR3 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTCHD1Q96NR3 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTCHD1Q96NR3 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.99■□□□□ 0.79
PTCHD1Q96NR3 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTCHD1Q96NR3 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTCHD1Q96NR3 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTCHD1Q96NR3 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
PTCHD1Q96NR3 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.99■□□□□ 0.79
PTCHD1Q96NR3 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.99■□□□□ 0.79
PTCHD1Q96NR3 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.99■□□□□ 0.79
PTCHD1Q96NR3 KRT18P61-201ENST00000585825 1298 ntBASIC19.99■□□□□ 0.79
PTCHD1Q96NR3 AC022517.1-201ENST00000592429 346 ntBASIC19.99■□□□□ 0.79
PTCHD1Q96NR3 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PTCHD1Q96NR3 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PTCHD1Q96NR3 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTCHD1Q96NR3 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTCHD1Q96NR3 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTCHD1Q96NR3 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
PTCHD1Q96NR3 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
PTCHD1Q96NR3 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTCHD1Q96NR3 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PTCHD1Q96NR3 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PTCHD1Q96NR3 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PTCHD1Q96NR3 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTCHD1Q96NR3 KRT19P1-201ENST00000405746 1186 ntBASIC19.98■□□□□ 0.79
PTCHD1Q96NR3 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
PTCHD1Q96NR3 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.98■□□□□ 0.79
PTCHD1Q96NR3 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTCHD1Q96NR3 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
PTCHD1Q96NR3 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
PTCHD1Q96NR3 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PTCHD1Q96NR3 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTCHD1Q96NR3 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PTCHD1Q96NR3 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTCHD1Q96NR3 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTCHD1Q96NR3 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
PTCHD1Q96NR3 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.97■□□□□ 0.79
PTCHD1Q96NR3 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.97■□□□□ 0.79
PTCHD1Q96NR3 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.97■□□□□ 0.79
PTCHD1Q96NR3 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.97■□□□□ 0.79
PTCHD1Q96NR3 AC104187.1-201ENST00000607510 612 ntBASIC19.97■□□□□ 0.79
PTCHD1Q96NR3 AC026471.6-201ENST00000622954 1905 ntBASIC19.97■□□□□ 0.79
PTCHD1Q96NR3 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTCHD1Q96NR3 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.97■□□□□ 0.79
PTCHD1Q96NR3 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTCHD1Q96NR3 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
PTCHD1Q96NR3 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTCHD1Q96NR3 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
PTCHD1Q96NR3 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTCHD1Q96NR3 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PTCHD1Q96NR3 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTCHD1Q96NR3 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PTCHD1Q96NR3 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
PTCHD1Q96NR3 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTCHD1Q96NR3 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
PTCHD1Q96NR3 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
PTCHD1Q96NR3 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTCHD1Q96NR3 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.96■□□□□ 0.79
PTCHD1Q96NR3 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.96■□□□□ 0.79
PTCHD1Q96NR3 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
PTCHD1Q96NR3 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTCHD1Q96NR3 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
PTCHD1Q96NR3 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
PTCHD1Q96NR3 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
PTCHD1Q96NR3 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.95■□□□□ 0.78
PTCHD1Q96NR3 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.95■□□□□ 0.78
PTCHD1Q96NR3 AC003102.1-202ENST00000563394 1796 ntBASIC19.95■□□□□ 0.78
PTCHD1Q96NR3 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.95■□□□□ 0.78
PTCHD1Q96NR3 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PTCHD1Q96NR3 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PTCHD1Q96NR3 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PTCHD1Q96NR3 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PTCHD1Q96NR3 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms