Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VMP1Q96GC9 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.19■□□□□ 0.82
VMP1Q96GC9 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.19■□□□□ 0.82
VMP1Q96GC9 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.19■□□□□ 0.82
VMP1Q96GC9 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.19■□□□□ 0.82
VMP1Q96GC9 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VMP1Q96GC9 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.19■□□□□ 0.82
VMP1Q96GC9 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
VMP1Q96GC9 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.19■□□□□ 0.82
VMP1Q96GC9 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
VMP1Q96GC9 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VMP1Q96GC9 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VMP1Q96GC9 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.19■□□□□ 0.82
VMP1Q96GC9 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.19■□□□□ 0.82
VMP1Q96GC9 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.19■□□□□ 0.82
VMP1Q96GC9 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.19■□□□□ 0.82
VMP1Q96GC9 MIR5787-201ENST00000611784 55 ntBASIC20.19■□□□□ 0.82
VMP1Q96GC9 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
VMP1Q96GC9 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.19■□□□□ 0.82
VMP1Q96GC9 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VMP1Q96GC9 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VMP1Q96GC9 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VMP1Q96GC9 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VMP1Q96GC9 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VMP1Q96GC9 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VMP1Q96GC9 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VMP1Q96GC9 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.18■□□□□ 0.82
VMP1Q96GC9 AC123595.1-201ENST00000440769 1046 ntBASIC20.18■□□□□ 0.82
VMP1Q96GC9 AC079089.2-201ENST00000531211 1277 ntBASIC20.18■□□□□ 0.82
VMP1Q96GC9 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.18■□□□□ 0.82
VMP1Q96GC9 SMUG1P1-201ENST00000590640 811 ntBASIC20.18■□□□□ 0.82
VMP1Q96GC9 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.18■□□□□ 0.82
VMP1Q96GC9 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.18■□□□□ 0.82
VMP1Q96GC9 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VMP1Q96GC9 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.18■□□□□ 0.82
VMP1Q96GC9 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
VMP1Q96GC9 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
VMP1Q96GC9 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
VMP1Q96GC9 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VMP1Q96GC9 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VMP1Q96GC9 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VMP1Q96GC9 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VMP1Q96GC9 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
VMP1Q96GC9 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VMP1Q96GC9 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
VMP1Q96GC9 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
VMP1Q96GC9 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
VMP1Q96GC9 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VMP1Q96GC9 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VMP1Q96GC9 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.17■□□□□ 0.82
VMP1Q96GC9 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.17■□□□□ 0.82
VMP1Q96GC9 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
VMP1Q96GC9 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VMP1Q96GC9 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
VMP1Q96GC9 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
VMP1Q96GC9 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VMP1Q96GC9 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VMP1Q96GC9 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VMP1Q96GC9 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VMP1Q96GC9 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VMP1Q96GC9 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VMP1Q96GC9 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
VMP1Q96GC9 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VMP1Q96GC9 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VMP1Q96GC9 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VMP1Q96GC9 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VMP1Q96GC9 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VMP1Q96GC9 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.16■□□□□ 0.82
VMP1Q96GC9 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.16■□□□□ 0.82
VMP1Q96GC9 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.16■□□□□ 0.82
VMP1Q96GC9 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VMP1Q96GC9 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VMP1Q96GC9 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
VMP1Q96GC9 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
VMP1Q96GC9 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VMP1Q96GC9 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.15■□□□□ 0.82
VMP1Q96GC9 AC026310.3-201ENST00000625186 2373 ntBASIC20.15■□□□□ 0.82
VMP1Q96GC9 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VMP1Q96GC9 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VMP1Q96GC9 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
VMP1Q96GC9 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VMP1Q96GC9 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VMP1Q96GC9 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VMP1Q96GC9 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
VMP1Q96GC9 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
VMP1Q96GC9 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.15■□□□□ 0.82
VMP1Q96GC9 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.15■□□□□ 0.82
VMP1Q96GC9 AC087623.3-201ENST00000607047 1098 ntBASIC20.15■□□□□ 0.82
VMP1Q96GC9 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VMP1Q96GC9 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.15■□□□□ 0.82
VMP1Q96GC9 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.15■□□□□ 0.82
VMP1Q96GC9 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
VMP1Q96GC9 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
VMP1Q96GC9 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
VMP1Q96GC9 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
VMP1Q96GC9 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.14■□□□□ 0.82
VMP1Q96GC9 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VMP1Q96GC9 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VMP1Q96GC9 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
VMP1Q96GC9 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms