Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 AC092667.1-201ENST00000434301 2586 ntBASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
DEPDC4Q8N2C3 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.61■□□□□ 0.73
DEPDC4Q8N2C3 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
DEPDC4Q8N2C3 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
DEPDC4Q8N2C3 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
DEPDC4Q8N2C3 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
DEPDC4Q8N2C3 AL157384.1-201ENST00000445995 2473 ntBASIC19.61■□□□□ 0.73
DEPDC4Q8N2C3 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
DEPDC4Q8N2C3 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
DEPDC4Q8N2C3 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
DEPDC4Q8N2C3 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
DEPDC4Q8N2C3 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
DEPDC4Q8N2C3 AL136162.1-201ENST00000607711 1078 ntBASIC19.61■□□□□ 0.73
DEPDC4Q8N2C3 AC106739.1-201ENST00000617035 715 ntBASIC19.61■□□□□ 0.73
DEPDC4Q8N2C3 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.61■□□□□ 0.73
DEPDC4Q8N2C3 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
DEPDC4Q8N2C3 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
DEPDC4Q8N2C3 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.61■□□□□ 0.73
DEPDC4Q8N2C3 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
DEPDC4Q8N2C3 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
DEPDC4Q8N2C3 SYT6-210ENST00000641643 1587 ntBASIC19.61■□□□□ 0.73
DEPDC4Q8N2C3 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
DEPDC4Q8N2C3 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
DEPDC4Q8N2C3 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
DEPDC4Q8N2C3 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.6■□□□□ 0.73
DEPDC4Q8N2C3 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
DEPDC4Q8N2C3 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
DEPDC4Q8N2C3 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
DEPDC4Q8N2C3 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
DEPDC4Q8N2C3 AC104564.3-201ENST00000582367 638 ntBASIC19.6■□□□□ 0.73
DEPDC4Q8N2C3 AC005837.3-201ENST00000612163 286 ntBASIC19.6■□□□□ 0.73
DEPDC4Q8N2C3 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.6■□□□□ 0.73
DEPDC4Q8N2C3 AC241377.3-202ENST00000626088 1088 ntBASIC19.6■□□□□ 0.73
DEPDC4Q8N2C3 AC241585.3-202ENST00000628937 1088 ntBASIC19.6■□□□□ 0.73
DEPDC4Q8N2C3 AC245100.8-202ENST00000629247 1058 ntBASIC19.6■□□□□ 0.73
DEPDC4Q8N2C3 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
DEPDC4Q8N2C3 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.6■□□□□ 0.73
DEPDC4Q8N2C3 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
DEPDC4Q8N2C3 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
DEPDC4Q8N2C3 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
DEPDC4Q8N2C3 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
DEPDC4Q8N2C3 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
DEPDC4Q8N2C3 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
DEPDC4Q8N2C3 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
DEPDC4Q8N2C3 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.59■□□□□ 0.73
DEPDC4Q8N2C3 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
DEPDC4Q8N2C3 AC009102.2-201ENST00000606772 1639 ntBASIC19.59■□□□□ 0.73
DEPDC4Q8N2C3 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
DEPDC4Q8N2C3 AC135279.3-201ENST00000610945 1311 ntBASIC19.59■□□□□ 0.73
DEPDC4Q8N2C3 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
DEPDC4Q8N2C3 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
DEPDC4Q8N2C3 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
DEPDC4Q8N2C3 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
DEPDC4Q8N2C3 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.59■□□□□ 0.73
DEPDC4Q8N2C3 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
DEPDC4Q8N2C3 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
DEPDC4Q8N2C3 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
DEPDC4Q8N2C3 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.59■□□□□ 0.73
DEPDC4Q8N2C3 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
DEPDC4Q8N2C3 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.59■□□□□ 0.73
DEPDC4Q8N2C3 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
DEPDC4Q8N2C3 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.58■□□□□ 0.73
DEPDC4Q8N2C3 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
DEPDC4Q8N2C3 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
DEPDC4Q8N2C3 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
DEPDC4Q8N2C3 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
DEPDC4Q8N2C3 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
DEPDC4Q8N2C3 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
DEPDC4Q8N2C3 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.58■□□□□ 0.72
DEPDC4Q8N2C3 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.58■□□□□ 0.72
DEPDC4Q8N2C3 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.58■□□□□ 0.72
DEPDC4Q8N2C3 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
DEPDC4Q8N2C3 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
DEPDC4Q8N2C3 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.58■□□□□ 0.72
DEPDC4Q8N2C3 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
DEPDC4Q8N2C3 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
DEPDC4Q8N2C3 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
DEPDC4Q8N2C3 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
DEPDC4Q8N2C3 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms