Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
BEST3Q8N1M1 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
BEST3Q8N1M1 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
BEST3Q8N1M1 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
BEST3Q8N1M1 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
BEST3Q8N1M1 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
BEST3Q8N1M1 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.64■□□□□ 0.73
BEST3Q8N1M1 AC006970.2-201ENST00000450065 779 ntBASIC19.64■□□□□ 0.73
BEST3Q8N1M1 AC010141.2-201ENST00000452426 721 ntBASIC19.64■□□□□ 0.73
BEST3Q8N1M1 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.64■□□□□ 0.73
BEST3Q8N1M1 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.64■□□□□ 0.73
BEST3Q8N1M1 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
BEST3Q8N1M1 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
BEST3Q8N1M1 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
BEST3Q8N1M1 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
BEST3Q8N1M1 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
BEST3Q8N1M1 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.64■□□□□ 0.73
BEST3Q8N1M1 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
BEST3Q8N1M1 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
BEST3Q8N1M1 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
BEST3Q8N1M1 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.63■□□□□ 0.73
BEST3Q8N1M1 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC19.63■□□□□ 0.73
BEST3Q8N1M1 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
BEST3Q8N1M1 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC19.63■□□□□ 0.73
BEST3Q8N1M1 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
BEST3Q8N1M1 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
BEST3Q8N1M1 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
BEST3Q8N1M1 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
BEST3Q8N1M1 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.63■□□□□ 0.73
BEST3Q8N1M1 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
BEST3Q8N1M1 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
BEST3Q8N1M1 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.63■□□□□ 0.73
BEST3Q8N1M1 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.63■□□□□ 0.73
BEST3Q8N1M1 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
BEST3Q8N1M1 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
BEST3Q8N1M1 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.63■□□□□ 0.73
BEST3Q8N1M1 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
BEST3Q8N1M1 CROCCP5-201ENST00000436658 830 ntBASIC19.63■□□□□ 0.73
BEST3Q8N1M1 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.63■□□□□ 0.73
BEST3Q8N1M1 AC138907.5-202ENST00000569484 235 ntBASIC19.63■□□□□ 0.73
BEST3Q8N1M1 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.63■□□□□ 0.73
BEST3Q8N1M1 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.63■□□□□ 0.73
BEST3Q8N1M1 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.63■□□□□ 0.73
BEST3Q8N1M1 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.63■□□□□ 0.73
BEST3Q8N1M1 MYCNOS-205ENST00000641950 531 ntBASIC19.63■□□□□ 0.73
BEST3Q8N1M1 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC19.62■□□□□ 0.73
BEST3Q8N1M1 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
BEST3Q8N1M1 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.62■□□□□ 0.73
BEST3Q8N1M1 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
BEST3Q8N1M1 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.62■□□□□ 0.73
BEST3Q8N1M1 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
BEST3Q8N1M1 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
BEST3Q8N1M1 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.62■□□□□ 0.73
BEST3Q8N1M1 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
BEST3Q8N1M1 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.62■□□□□ 0.73
BEST3Q8N1M1 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
BEST3Q8N1M1 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
BEST3Q8N1M1 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.62■□□□□ 0.73
BEST3Q8N1M1 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
BEST3Q8N1M1 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
BEST3Q8N1M1 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
BEST3Q8N1M1 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.62■□□□□ 0.73
BEST3Q8N1M1 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.62■□□□□ 0.73
BEST3Q8N1M1 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
BEST3Q8N1M1 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
BEST3Q8N1M1 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
BEST3Q8N1M1 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
BEST3Q8N1M1 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.61■□□□□ 0.73
BEST3Q8N1M1 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
BEST3Q8N1M1 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
BEST3Q8N1M1 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
BEST3Q8N1M1 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.61■□□□□ 0.73
BEST3Q8N1M1 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC19.61■□□□□ 0.73
BEST3Q8N1M1 MIR663A-201ENST00000385250 93 ntBASIC19.61■□□□□ 0.73
BEST3Q8N1M1 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.61■□□□□ 0.73
BEST3Q8N1M1 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.61■□□□□ 0.73
BEST3Q8N1M1 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
BEST3Q8N1M1 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.61■□□□□ 0.73
BEST3Q8N1M1 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
BEST3Q8N1M1 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.61■□□□□ 0.73
BEST3Q8N1M1 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
BEST3Q8N1M1 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.61■□□□□ 0.73
BEST3Q8N1M1 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.61■□□□□ 0.73
BEST3Q8N1M1 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.6■□□□□ 0.73
BEST3Q8N1M1 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
BEST3Q8N1M1 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
BEST3Q8N1M1 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
BEST3Q8N1M1 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
BEST3Q8N1M1 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
BEST3Q8N1M1 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
BEST3Q8N1M1 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
BEST3Q8N1M1 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
BEST3Q8N1M1 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
BEST3Q8N1M1 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
BEST3Q8N1M1 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
BEST3Q8N1M1 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
BEST3Q8N1M1 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.6■□□□□ 0.73
BEST3Q8N1M1 EEF1DP3-203ENST00000566025 782 ntBASIC19.6■□□□□ 0.73
BEST3Q8N1M1 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.6■□□□□ 0.73
BEST3Q8N1M1 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms