Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC116Q8IYX3 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC116Q8IYX3 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.97■□□□□ 0.79
CCDC116Q8IYX3 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC116Q8IYX3 AC055733.4-201ENST00000638462 1354 ntBASIC19.97■□□□□ 0.79
CCDC116Q8IYX3 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC116Q8IYX3 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.97■□□□□ 0.79
CCDC116Q8IYX3 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.97■□□□□ 0.79
CCDC116Q8IYX3 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.97■□□□□ 0.79
CCDC116Q8IYX3 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC116Q8IYX3 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
CCDC116Q8IYX3 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
CCDC116Q8IYX3 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC116Q8IYX3 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC116Q8IYX3 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
CCDC116Q8IYX3 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC116Q8IYX3 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.95■□□□□ 0.79
CCDC116Q8IYX3 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.95■□□□□ 0.79
CCDC116Q8IYX3 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC116Q8IYX3 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
CCDC116Q8IYX3 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC116Q8IYX3 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
CCDC116Q8IYX3 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
CCDC116Q8IYX3 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC116Q8IYX3 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.95■□□□□ 0.78
CCDC116Q8IYX3 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
CCDC116Q8IYX3 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
CCDC116Q8IYX3 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC116Q8IYX3 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC116Q8IYX3 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.95■□□□□ 0.78
CCDC116Q8IYX3 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC116Q8IYX3 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC116Q8IYX3 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC116Q8IYX3 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC116Q8IYX3 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC116Q8IYX3 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.94■□□□□ 0.78
CCDC116Q8IYX3 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC116Q8IYX3 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC116Q8IYX3 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC116Q8IYX3 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC116Q8IYX3 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
CCDC116Q8IYX3 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
CCDC116Q8IYX3 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC116Q8IYX3 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC116Q8IYX3 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.94■□□□□ 0.78
CCDC116Q8IYX3 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.94■□□□□ 0.78
CCDC116Q8IYX3 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC116Q8IYX3 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.94■□□□□ 0.78
CCDC116Q8IYX3 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.94■□□□□ 0.78
CCDC116Q8IYX3 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
CCDC116Q8IYX3 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC116Q8IYX3 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
CCDC116Q8IYX3 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
CCDC116Q8IYX3 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC116Q8IYX3 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.93■□□□□ 0.78
CCDC116Q8IYX3 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC116Q8IYX3 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC116Q8IYX3 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC116Q8IYX3 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC116Q8IYX3 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCDC116Q8IYX3 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC116Q8IYX3 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC116Q8IYX3 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.93■□□□□ 0.78
CCDC116Q8IYX3 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC116Q8IYX3 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC116Q8IYX3 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC116Q8IYX3 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC116Q8IYX3 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC116Q8IYX3 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC116Q8IYX3 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC116Q8IYX3 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC116Q8IYX3 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC116Q8IYX3 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC116Q8IYX3 TPRG1LP1-201ENST00000598702 760 ntBASIC19.92■□□□□ 0.78
CCDC116Q8IYX3 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC116Q8IYX3 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC116Q8IYX3 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC116Q8IYX3 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms