Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NUDCD3Q8IVD9 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
NUDCD3Q8IVD9 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NUDCD3Q8IVD9 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NUDCD3Q8IVD9 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NUDCD3Q8IVD9 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.02■□□□□ 0.96
NUDCD3Q8IVD9 AC239859.2-201ENST00000444165 318 ntBASIC21.02■□□□□ 0.96
NUDCD3Q8IVD9 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
NUDCD3Q8IVD9 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NUDCD3Q8IVD9 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NUDCD3Q8IVD9 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
NUDCD3Q8IVD9 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.02■□□□□ 0.95
NUDCD3Q8IVD9 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
NUDCD3Q8IVD9 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.95
NUDCD3Q8IVD9 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
NUDCD3Q8IVD9 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.01■□□□□ 0.95
NUDCD3Q8IVD9 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NUDCD3Q8IVD9 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.01■□□□□ 0.95
NUDCD3Q8IVD9 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.01■□□□□ 0.95
NUDCD3Q8IVD9 AC006455.2-201ENST00000429931 906 ntBASIC21.01■□□□□ 0.95
NUDCD3Q8IVD9 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
NUDCD3Q8IVD9 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
NUDCD3Q8IVD9 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NUDCD3Q8IVD9 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21■□□□□ 0.95
NUDCD3Q8IVD9 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
NUDCD3Q8IVD9 AC092667.1-201ENST00000434301 2586 ntBASIC21■□□□□ 0.95
NUDCD3Q8IVD9 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
NUDCD3Q8IVD9 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NUDCD3Q8IVD9 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
NUDCD3Q8IVD9 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NUDCD3Q8IVD9 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21■□□□□ 0.95
NUDCD3Q8IVD9 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
NUDCD3Q8IVD9 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21■□□□□ 0.95
NUDCD3Q8IVD9 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21■□□□□ 0.95
NUDCD3Q8IVD9 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
NUDCD3Q8IVD9 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
NUDCD3Q8IVD9 AC087239.1-201ENST00000622671 572 ntBASIC21■□□□□ 0.95
NUDCD3Q8IVD9 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NUDCD3Q8IVD9 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21■□□□□ 0.95
NUDCD3Q8IVD9 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21■□□□□ 0.95
NUDCD3Q8IVD9 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
NUDCD3Q8IVD9 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NUDCD3Q8IVD9 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NUDCD3Q8IVD9 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NUDCD3Q8IVD9 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NUDCD3Q8IVD9 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NUDCD3Q8IVD9 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
NUDCD3Q8IVD9 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.99■□□□□ 0.95
NUDCD3Q8IVD9 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NUDCD3Q8IVD9 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
NUDCD3Q8IVD9 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NUDCD3Q8IVD9 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NUDCD3Q8IVD9 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NUDCD3Q8IVD9 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NUDCD3Q8IVD9 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
NUDCD3Q8IVD9 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NUDCD3Q8IVD9 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NUDCD3Q8IVD9 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NUDCD3Q8IVD9 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NUDCD3Q8IVD9 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NUDCD3Q8IVD9 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NUDCD3Q8IVD9 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
NUDCD3Q8IVD9 MIR6724-1-201ENST00000616420 92 ntBASIC20.98■□□□□ 0.95
NUDCD3Q8IVD9 MIR6724-2-201ENST00000616483 92 ntBASIC20.98■□□□□ 0.95
NUDCD3Q8IVD9 MIR6724-4-201ENST00000617390 92 ntBASIC20.98■□□□□ 0.95
NUDCD3Q8IVD9 MIR6724-3-201ENST00000622482 92 ntBASIC20.98■□□□□ 0.95
NUDCD3Q8IVD9 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NUDCD3Q8IVD9 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
NUDCD3Q8IVD9 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NUDCD3Q8IVD9 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
NUDCD3Q8IVD9 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NUDCD3Q8IVD9 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
NUDCD3Q8IVD9 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NUDCD3Q8IVD9 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NUDCD3Q8IVD9 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.97■□□□□ 0.95
NUDCD3Q8IVD9 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NUDCD3Q8IVD9 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NUDCD3Q8IVD9 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.97■□□□□ 0.95
NUDCD3Q8IVD9 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
NUDCD3Q8IVD9 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NUDCD3Q8IVD9 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.97■□□□□ 0.95
NUDCD3Q8IVD9 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NUDCD3Q8IVD9 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NUDCD3Q8IVD9 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NUDCD3Q8IVD9 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
NUDCD3Q8IVD9 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.97■□□□□ 0.95
NUDCD3Q8IVD9 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NUDCD3Q8IVD9 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
NUDCD3Q8IVD9 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NUDCD3Q8IVD9 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NUDCD3Q8IVD9 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NUDCD3Q8IVD9 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
NUDCD3Q8IVD9 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
NUDCD3Q8IVD9 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.96■□□□□ 0.95
NUDCD3Q8IVD9 AC010141.3-201ENST00000456659 717 ntBASIC20.96■□□□□ 0.95
NUDCD3Q8IVD9 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NUDCD3Q8IVD9 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.96■□□□□ 0.95
NUDCD3Q8IVD9 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
NUDCD3Q8IVD9 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NUDCD3Q8IVD9 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms