Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM40Q6P9F5 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
TRIM40Q6P9F5 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRIM40Q6P9F5 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
TRIM40Q6P9F5 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
TRIM40Q6P9F5 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
TRIM40Q6P9F5 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
TRIM40Q6P9F5 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
TRIM40Q6P9F5 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRIM40Q6P9F5 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.33■□□□□ 0.84
TRIM40Q6P9F5 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRIM40Q6P9F5 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.33■□□□□ 0.84
TRIM40Q6P9F5 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
TRIM40Q6P9F5 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.32■□□□□ 0.84
TRIM40Q6P9F5 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM40Q6P9F5 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.32■□□□□ 0.84
TRIM40Q6P9F5 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM40Q6P9F5 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM40Q6P9F5 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
TRIM40Q6P9F5 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM40Q6P9F5 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.32■□□□□ 0.84
TRIM40Q6P9F5 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM40Q6P9F5 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM40Q6P9F5 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
TRIM40Q6P9F5 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM40Q6P9F5 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
TRIM40Q6P9F5 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.32■□□□□ 0.84
TRIM40Q6P9F5 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM40Q6P9F5 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRIM40Q6P9F5 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.32■□□□□ 0.84
TRIM40Q6P9F5 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.32■□□□□ 0.84
TRIM40Q6P9F5 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM40Q6P9F5 AC026471.6-201ENST00000622954 1905 ntBASIC20.31■□□□□ 0.84
TRIM40Q6P9F5 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM40Q6P9F5 AC019069.1-201ENST00000610008 1333 ntBASIC20.31■□□□□ 0.84
TRIM40Q6P9F5 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM40Q6P9F5 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.31■□□□□ 0.84
TRIM40Q6P9F5 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
TRIM40Q6P9F5 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.31■□□□□ 0.84
TRIM40Q6P9F5 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM40Q6P9F5 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
TRIM40Q6P9F5 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM40Q6P9F5 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM40Q6P9F5 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.3■□□□□ 0.84
TRIM40Q6P9F5 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.3■□□□□ 0.84
TRIM40Q6P9F5 AL137060.1-201ENST00000618151 2648 ntBASIC20.3■□□□□ 0.84
TRIM40Q6P9F5 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM40Q6P9F5 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.3■□□□□ 0.84
TRIM40Q6P9F5 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM40Q6P9F5 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
TRIM40Q6P9F5 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM40Q6P9F5 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.3■□□□□ 0.84
TRIM40Q6P9F5 AC104564.3-201ENST00000582367 638 ntBASIC20.3■□□□□ 0.84
TRIM40Q6P9F5 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
TRIM40Q6P9F5 TPRG1LP1-201ENST00000598702 760 ntBASIC20.3■□□□□ 0.84
TRIM40Q6P9F5 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM40Q6P9F5 AC244015.2-201ENST00000616358 1861 ntBASIC20.3■□□□□ 0.84
TRIM40Q6P9F5 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM40Q6P9F5 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
TRIM40Q6P9F5 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.3■□□□□ 0.84
TRIM40Q6P9F5 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
TRIM40Q6P9F5 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM40Q6P9F5 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.29■□□□□ 0.84
TRIM40Q6P9F5 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.29■□□□□ 0.84
TRIM40Q6P9F5 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
TRIM40Q6P9F5 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
TRIM40Q6P9F5 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.29■□□□□ 0.84
TRIM40Q6P9F5 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.29■□□□□ 0.84
TRIM40Q6P9F5 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.29■□□□□ 0.84
TRIM40Q6P9F5 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
TRIM40Q6P9F5 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM40Q6P9F5 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
TRIM40Q6P9F5 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRIM40Q6P9F5 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.28■□□□□ 0.84
TRIM40Q6P9F5 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM40Q6P9F5 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM40Q6P9F5 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.28■□□□□ 0.84
TRIM40Q6P9F5 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
TRIM40Q6P9F5 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.28■□□□□ 0.84
TRIM40Q6P9F5 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM40Q6P9F5 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM40Q6P9F5 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM40Q6P9F5 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.28■□□□□ 0.84
TRIM40Q6P9F5 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM40Q6P9F5 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.28■□□□□ 0.84
TRIM40Q6P9F5 AC055733.4-201ENST00000638462 1354 ntBASIC20.28■□□□□ 0.84
TRIM40Q6P9F5 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.28■□□□□ 0.84
TRIM40Q6P9F5 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM40Q6P9F5 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TRIM40Q6P9F5 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
TRIM40Q6P9F5 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.27■□□□□ 0.84
TRIM40Q6P9F5 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM40Q6P9F5 AC026310.3-201ENST00000625186 2373 ntBASIC20.27■□□□□ 0.84
TRIM40Q6P9F5 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM40Q6P9F5 AC003102.1-202ENST00000563394 1796 ntBASIC20.27■□□□□ 0.84
TRIM40Q6P9F5 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM40Q6P9F5 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM40Q6P9F5 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRIM40Q6P9F5 LINC02228-203ENST00000641970 1355 ntBASIC20.27■□□□□ 0.84
TRIM40Q6P9F5 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms