Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC40Q4G0X9 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC23.3■■□□□ 1.32
CCDC40Q4G0X9 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC23.3■■□□□ 1.32
CCDC40Q4G0X9 AF213884.3-201ENST00000563833 479 ntBASIC23.3■■□□□ 1.32
CCDC40Q4G0X9 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC40Q4G0X9 AL355001.2-201ENST00000620617 1191 ntBASIC23.3■■□□□ 1.32
CCDC40Q4G0X9 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC40Q4G0X9 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC40Q4G0X9 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC40Q4G0X9 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC23.3■■□□□ 1.32
CCDC40Q4G0X9 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC23.3■■□□□ 1.32
CCDC40Q4G0X9 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC40Q4G0X9 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC40Q4G0X9 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC40Q4G0X9 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CCDC40Q4G0X9 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC23.29■■□□□ 1.32
CCDC40Q4G0X9 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
CCDC40Q4G0X9 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC40Q4G0X9 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCDC40Q4G0X9 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC23.29■■□□□ 1.32
CCDC40Q4G0X9 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC23.29■■□□□ 1.32
CCDC40Q4G0X9 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC40Q4G0X9 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC40Q4G0X9 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC40Q4G0X9 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC40Q4G0X9 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC40Q4G0X9 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC40Q4G0X9 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC23.28■■□□□ 1.32
CCDC40Q4G0X9 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC23.28■■□□□ 1.32
CCDC40Q4G0X9 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
CCDC40Q4G0X9 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC40Q4G0X9 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC40Q4G0X9 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC40Q4G0X9 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC40Q4G0X9 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CCDC40Q4G0X9 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC40Q4G0X9 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC23.27■■□□□ 1.32
CCDC40Q4G0X9 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC40Q4G0X9 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC40Q4G0X9 LHPP-203ENST00000392757 840 ntTSL 3 BASIC23.27■■□□□ 1.32
CCDC40Q4G0X9 AC105233.4-201ENST00000642045 216 ntBASIC23.27■■□□□ 1.32
CCDC40Q4G0X9 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCDC40Q4G0X9 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC23.27■■□□□ 1.32
CCDC40Q4G0X9 PALM-208ENST00000592155 2272 ntTSL 4 BASIC23.26■■□□□ 1.31
CCDC40Q4G0X9 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC23.26■■□□□ 1.31
CCDC40Q4G0X9 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC40Q4G0X9 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC23.26■■□□□ 1.31
CCDC40Q4G0X9 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC40Q4G0X9 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC40Q4G0X9 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC23.26■■□□□ 1.31
CCDC40Q4G0X9 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
CCDC40Q4G0X9 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC23.26■■□□□ 1.31
CCDC40Q4G0X9 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC23.26■■□□□ 1.31
CCDC40Q4G0X9 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC23.26■■□□□ 1.31
CCDC40Q4G0X9 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC40Q4G0X9 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
CCDC40Q4G0X9 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC40Q4G0X9 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC23.26■■□□□ 1.31
CCDC40Q4G0X9 RASA4CP-201ENST00000424092 1398 ntBASIC23.26■■□□□ 1.31
CCDC40Q4G0X9 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC40Q4G0X9 FEM1AP4-201ENST00000443167 1987 ntBASIC23.25■■□□□ 1.31
CCDC40Q4G0X9 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC23.25■■□□□ 1.31
CCDC40Q4G0X9 PXK-203ENST00000383715 1756 ntTSL 5 BASIC23.25■■□□□ 1.31
CCDC40Q4G0X9 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC23.25■■□□□ 1.31
CCDC40Q4G0X9 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
CCDC40Q4G0X9 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC23.25■■□□□ 1.31
CCDC40Q4G0X9 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC40Q4G0X9 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC40Q4G0X9 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC40Q4G0X9 MIR939-201ENST00000401314 82 ntBASIC23.25■■□□□ 1.31
CCDC40Q4G0X9 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC23.25■■□□□ 1.31
CCDC40Q4G0X9 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC23.25■■□□□ 1.31
CCDC40Q4G0X9 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC23.25■■□□□ 1.31
CCDC40Q4G0X9 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC23.25■■□□□ 1.31
CCDC40Q4G0X9 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC23.25■■□□□ 1.31
CCDC40Q4G0X9 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC40Q4G0X9 AF106564.1-201ENST00000607058 2553 ntBASIC23.25■■□□□ 1.31
CCDC40Q4G0X9 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC40Q4G0X9 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC23.25■■□□□ 1.31
CCDC40Q4G0X9 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC40Q4G0X9 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC40Q4G0X9 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC40Q4G0X9 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC40Q4G0X9 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC40Q4G0X9 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
CCDC40Q4G0X9 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC40Q4G0X9 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC40Q4G0X9 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC23.24■■□□□ 1.31
CCDC40Q4G0X9 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC23.24■■□□□ 1.31
CCDC40Q4G0X9 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC40Q4G0X9 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC23.24■■□□□ 1.31
CCDC40Q4G0X9 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC23.24■■□□□ 1.31
CCDC40Q4G0X9 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC40Q4G0X9 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC23.24■■□□□ 1.31
CCDC40Q4G0X9 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC23.24■■□□□ 1.31
CCDC40Q4G0X9 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC40Q4G0X9 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC40Q4G0X9 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC40Q4G0X9 AC091305.1-201ENST00000479476 895 ntBASIC23.23■■□□□ 1.31
CCDC40Q4G0X9 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC23.23■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms