Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC144BQ3MJ40 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC24.63■■□□□ 1.53
CCDC144BQ3MJ40 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC144BQ3MJ40 AC092053.2-201ENST00000640557 1818 ntBASIC24.63■■□□□ 1.53
CCDC144BQ3MJ40 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC144BQ3MJ40 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
CCDC144BQ3MJ40 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC144BQ3MJ40 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC144BQ3MJ40 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC144BQ3MJ40 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC144BQ3MJ40 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC144BQ3MJ40 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC24.62■■□□□ 1.53
CCDC144BQ3MJ40 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC24.62■■□□□ 1.53
CCDC144BQ3MJ40 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC24.62■■□□□ 1.53
CCDC144BQ3MJ40 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC24.62■■□□□ 1.53
CCDC144BQ3MJ40 EMC9-206ENST00000560403 872 ntTSL 2 BASIC24.62■■□□□ 1.53
CCDC144BQ3MJ40 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC144BQ3MJ40 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC24.62■■□□□ 1.53
CCDC144BQ3MJ40 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC24.62■■□□□ 1.53
CCDC144BQ3MJ40 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
CCDC144BQ3MJ40 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC144BQ3MJ40 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC24.61■■□□□ 1.53
CCDC144BQ3MJ40 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC24.61■■□□□ 1.53
CCDC144BQ3MJ40 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC144BQ3MJ40 AC006970.2-201ENST00000450065 779 ntBASIC24.61■■□□□ 1.53
CCDC144BQ3MJ40 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC24.61■■□□□ 1.53
CCDC144BQ3MJ40 SPI1-203ENST00000533030 661 ntTSL 2 BASIC24.61■■□□□ 1.53
CCDC144BQ3MJ40 AC011767.1-201ENST00000617410 1153 ntBASIC24.61■■□□□ 1.53
CCDC144BQ3MJ40 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC144BQ3MJ40 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC24.61■■□□□ 1.53
CCDC144BQ3MJ40 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC144BQ3MJ40 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC144BQ3MJ40 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC144BQ3MJ40 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC24.61■■□□□ 1.53
CCDC144BQ3MJ40 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC144BQ3MJ40 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CCDC144BQ3MJ40 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC24.61■■□□□ 1.53
CCDC144BQ3MJ40 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC24.6■■□□□ 1.53
CCDC144BQ3MJ40 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC24.6■■□□□ 1.53
CCDC144BQ3MJ40 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC24.6■■□□□ 1.53
CCDC144BQ3MJ40 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
CCDC144BQ3MJ40 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC24.6■■□□□ 1.53
CCDC144BQ3MJ40 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC24.6■■□□□ 1.53
CCDC144BQ3MJ40 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC24.6■■□□□ 1.53
CCDC144BQ3MJ40 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
CCDC144BQ3MJ40 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC24.6■■□□□ 1.53
CCDC144BQ3MJ40 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC24.6■■□□□ 1.53
CCDC144BQ3MJ40 BID-212ENST00000614949 1988 ntTSL 5 BASIC24.6■■□□□ 1.53
CCDC144BQ3MJ40 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC24.59■■□□□ 1.53
CCDC144BQ3MJ40 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC24.59■■□□□ 1.53
CCDC144BQ3MJ40 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC24.59■■□□□ 1.53
CCDC144BQ3MJ40 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC144BQ3MJ40 METTL26-203ENST00000397664 604 ntTSL 2 BASIC24.59■■□□□ 1.53
CCDC144BQ3MJ40 KRT18P11-201ENST00000435214 1283 ntBASIC24.59■■□□□ 1.53
CCDC144BQ3MJ40 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC144BQ3MJ40 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC24.59■■□□□ 1.53
CCDC144BQ3MJ40 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC24.59■■□□□ 1.53
CCDC144BQ3MJ40 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC144BQ3MJ40 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC144BQ3MJ40 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC144BQ3MJ40 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC24.59■■□□□ 1.53
CCDC144BQ3MJ40 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC24.59■■□□□ 1.53
CCDC144BQ3MJ40 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
CCDC144BQ3MJ40 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC144BQ3MJ40 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC24.58■■□□□ 1.53
CCDC144BQ3MJ40 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC144BQ3MJ40 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC24.58■■□□□ 1.53
CCDC144BQ3MJ40 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC144BQ3MJ40 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC24.58■■□□□ 1.53
CCDC144BQ3MJ40 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC144BQ3MJ40 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC24.58■■□□□ 1.53
CCDC144BQ3MJ40 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC144BQ3MJ40 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
CCDC144BQ3MJ40 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC24.58■■□□□ 1.52
CCDC144BQ3MJ40 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
CCDC144BQ3MJ40 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC24.57■■□□□ 1.52
CCDC144BQ3MJ40 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC144BQ3MJ40 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC144BQ3MJ40 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC24.57■■□□□ 1.52
CCDC144BQ3MJ40 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC24.57■■□□□ 1.52
CCDC144BQ3MJ40 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC144BQ3MJ40 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC144BQ3MJ40 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC144BQ3MJ40 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC144BQ3MJ40 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC24.57■■□□□ 1.52
CCDC144BQ3MJ40 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC144BQ3MJ40 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC144BQ3MJ40 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC24.57■■□□□ 1.52
CCDC144BQ3MJ40 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CCDC144BQ3MJ40 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC24.57■■□□□ 1.52
CCDC144BQ3MJ40 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC144BQ3MJ40 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC144BQ3MJ40 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC144BQ3MJ40 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC24.56■■□□□ 1.52
CCDC144BQ3MJ40 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC24.56■■□□□ 1.52
CCDC144BQ3MJ40 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC144BQ3MJ40 SLC25A24-204ENST00000569674 2357 ntBASIC24.56■■□□□ 1.52
CCDC144BQ3MJ40 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CCDC144BQ3MJ40 NCF1B-203ENST00000435988 1254 ntBASIC24.56■■□□□ 1.52
CCDC144BQ3MJ40 AL109923.1-201ENST00000618799 583 ntBASIC24.56■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms