Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXF1Q12946 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.24■□□□□ 0.67
FOXF1Q12946 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.24■□□□□ 0.67
FOXF1Q12946 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
FOXF1Q12946 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.24■□□□□ 0.67
FOXF1Q12946 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
FOXF1Q12946 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.24■□□□□ 0.67
FOXF1Q12946 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
FOXF1Q12946 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXF1Q12946 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.24■□□□□ 0.67
FOXF1Q12946 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
FOXF1Q12946 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXF1Q12946 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
FOXF1Q12946 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXF1Q12946 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.23■□□□□ 0.67
FOXF1Q12946 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.23■□□□□ 0.67
FOXF1Q12946 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.23■□□□□ 0.67
FOXF1Q12946 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.23■□□□□ 0.67
FOXF1Q12946 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.23■□□□□ 0.67
FOXF1Q12946 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
FOXF1Q12946 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.23■□□□□ 0.67
FOXF1Q12946 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
FOXF1Q12946 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXF1Q12946 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
FOXF1Q12946 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
FOXF1Q12946 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
FOXF1Q12946 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
FOXF1Q12946 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
FOXF1Q12946 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
FOXF1Q12946 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXF1Q12946 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
FOXF1Q12946 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXF1Q12946 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXF1Q12946 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXF1Q12946 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXF1Q12946 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
FOXF1Q12946 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
FOXF1Q12946 AC034268.1-201ENST00000441047 882 ntBASIC19.22■□□□□ 0.67
FOXF1Q12946 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.22■□□□□ 0.67
FOXF1Q12946 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.22■□□□□ 0.67
FOXF1Q12946 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
FOXF1Q12946 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
FOXF1Q12946 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
FOXF1Q12946 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.21■□□□□ 0.67
FOXF1Q12946 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXF1Q12946 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
FOXF1Q12946 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
FOXF1Q12946 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXF1Q12946 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.21■□□□□ 0.67
FOXF1Q12946 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
FOXF1Q12946 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXF1Q12946 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
FOXF1Q12946 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.21■□□□□ 0.67
FOXF1Q12946 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXF1Q12946 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.21■□□□□ 0.67
FOXF1Q12946 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
FOXF1Q12946 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXF1Q12946 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXF1Q12946 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
FOXF1Q12946 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
FOXF1Q12946 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXF1Q12946 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXF1Q12946 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.2■□□□□ 0.66
FOXF1Q12946 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXF1Q12946 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXF1Q12946 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
FOXF1Q12946 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXF1Q12946 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.2■□□□□ 0.66
FOXF1Q12946 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.2■□□□□ 0.66
FOXF1Q12946 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.2■□□□□ 0.66
FOXF1Q12946 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.2■□□□□ 0.66
FOXF1Q12946 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.2■□□□□ 0.66
FOXF1Q12946 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
FOXF1Q12946 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.2■□□□□ 0.66
FOXF1Q12946 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.2■□□□□ 0.66
FOXF1Q12946 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
FOXF1Q12946 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.19■□□□□ 0.66
FOXF1Q12946 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXF1Q12946 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.19■□□□□ 0.66
FOXF1Q12946 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
FOXF1Q12946 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXF1Q12946 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXF1Q12946 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
FOXF1Q12946 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.19■□□□□ 0.66
FOXF1Q12946 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.19■□□□□ 0.66
FOXF1Q12946 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
FOXF1Q12946 MIR5787-201ENST00000611784 55 ntBASIC19.19■□□□□ 0.66
FOXF1Q12946 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.19■□□□□ 0.66
FOXF1Q12946 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXF1Q12946 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
FOXF1Q12946 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
FOXF1Q12946 AC004854.2-201ENST00000608450 1441 ntBASIC19.18■□□□□ 0.66
FOXF1Q12946 AC244015.2-201ENST00000616358 1861 ntBASIC19.18■□□□□ 0.66
FOXF1Q12946 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXF1Q12946 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.18■□□□□ 0.66
FOXF1Q12946 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
FOXF1Q12946 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXF1Q12946 EEF1DP3-203ENST00000566025 782 ntBASIC19.18■□□□□ 0.66
FOXF1Q12946 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.18■□□□□ 0.66
FOXF1Q12946 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms