Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VSX2P58304 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
VSX2P58304 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VSX2P58304 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.3■□□□□ 0.84
VSX2P58304 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.3■□□□□ 0.84
VSX2P58304 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.3■□□□□ 0.84
VSX2P58304 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.3■□□□□ 0.84
VSX2P58304 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.3■□□□□ 0.84
VSX2P58304 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
VSX2P58304 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VSX2P58304 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.29■□□□□ 0.84
VSX2P58304 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.29■□□□□ 0.84
VSX2P58304 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.29■□□□□ 0.84
VSX2P58304 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VSX2P58304 AL117328.2-201ENST00000624617 1940 ntBASIC20.29■□□□□ 0.84
VSX2P58304 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
VSX2P58304 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VSX2P58304 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
VSX2P58304 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VSX2P58304 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VSX2P58304 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.29■□□□□ 0.84
VSX2P58304 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.29■□□□□ 0.84
VSX2P58304 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VSX2P58304 AC003102.1-202ENST00000563394 1796 ntBASIC20.29■□□□□ 0.84
VSX2P58304 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VSX2P58304 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
VSX2P58304 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VSX2P58304 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.28■□□□□ 0.84
VSX2P58304 AC016769.1-201ENST00000409132 1010 ntBASIC20.28■□□□□ 0.84
VSX2P58304 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.28■□□□□ 0.84
VSX2P58304 AL137784.2-201ENST00000607332 1000 ntBASIC20.28■□□□□ 0.84
VSX2P58304 AC092437.1-201ENST00000624794 1048 ntBASIC20.28■□□□□ 0.84
VSX2P58304 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
VSX2P58304 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.28■□□□□ 0.84
VSX2P58304 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VSX2P58304 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
VSX2P58304 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VSX2P58304 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VSX2P58304 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.27■□□□□ 0.84
VSX2P58304 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
VSX2P58304 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
VSX2P58304 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.27■□□□□ 0.84
VSX2P58304 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
VSX2P58304 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VSX2P58304 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.27■□□□□ 0.84
VSX2P58304 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VSX2P58304 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.27■□□□□ 0.84
VSX2P58304 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.27■□□□□ 0.84
VSX2P58304 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.27■□□□□ 0.84
VSX2P58304 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
VSX2P58304 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
VSX2P58304 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VSX2P58304 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VSX2P58304 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VSX2P58304 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VSX2P58304 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VSX2P58304 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
VSX2P58304 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VSX2P58304 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VSX2P58304 AC010542.4-201ENST00000563151 1910 ntBASIC20.26■□□□□ 0.83
VSX2P58304 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
VSX2P58304 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VSX2P58304 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.26■□□□□ 0.83
VSX2P58304 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VSX2P58304 AC004911.1-201ENST00000416316 871 ntBASIC20.26■□□□□ 0.83
VSX2P58304 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.26■□□□□ 0.83
VSX2P58304 AP001160.3-201ENST00000601484 763 ntBASIC20.26■□□□□ 0.83
VSX2P58304 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
VSX2P58304 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VSX2P58304 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
VSX2P58304 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
VSX2P58304 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VSX2P58304 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VSX2P58304 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
VSX2P58304 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VSX2P58304 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VSX2P58304 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.25■□□□□ 0.83
VSX2P58304 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.25■□□□□ 0.83
VSX2P58304 EEF1DP3-203ENST00000566025 782 ntBASIC20.25■□□□□ 0.83
VSX2P58304 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VSX2P58304 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VSX2P58304 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VSX2P58304 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
VSX2P58304 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VSX2P58304 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.24■□□□□ 0.83
VSX2P58304 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VSX2P58304 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
VSX2P58304 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VSX2P58304 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VSX2P58304 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
VSX2P58304 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.24■□□□□ 0.83
VSX2P58304 AC053503.5-201ENST00000601508 636 ntBASIC20.24■□□□□ 0.83
VSX2P58304 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VSX2P58304 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VSX2P58304 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VSX2P58304 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VSX2P58304 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VSX2P58304 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.23■□□□□ 0.83
VSX2P58304 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.23■□□□□ 0.83
VSX2P58304 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms