Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
CLTCL1P53675 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
CLTCL1P53675 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
CLTCL1P53675 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
CLTCL1P53675 AC003102.1-202ENST00000563394 1796 ntBASIC30.67■■■□□ 2.5
CLTCL1P53675 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC30.66■■■□□ 2.5
CLTCL1P53675 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC30.66■■■□□ 2.5
CLTCL1P53675 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC30.66■■■□□ 2.5
CLTCL1P53675 RARG-204ENST00000543726 1779 ntTSL 2 BASIC30.66■■■□□ 2.5
CLTCL1P53675 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
CLTCL1P53675 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC30.65■■■□□ 2.5
CLTCL1P53675 AC069236.1-201ENST00000604339 616 ntBASIC30.65■■■□□ 2.5
CLTCL1P53675 AC243732.1-201ENST00000612648 864 ntBASIC30.65■■■□□ 2.5
CLTCL1P53675 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
CLTCL1P53675 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
CLTCL1P53675 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC30.65■■■□□ 2.5
CLTCL1P53675 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
CLTCL1P53675 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
CLTCL1P53675 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
CLTCL1P53675 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
CLTCL1P53675 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
CLTCL1P53675 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC30.65■■■□□ 2.5
CLTCL1P53675 AL162412.1-201ENST00000567129 965 ntBASIC30.65■■■□□ 2.5
CLTCL1P53675 AC066615.1-201ENST00000640911 628 ntBASIC30.65■■■□□ 2.5
CLTCL1P53675 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC30.65■■■□□ 2.5
CLTCL1P53675 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC30.65■■■□□ 2.5
CLTCL1P53675 PKM-204ENST00000449901 2526 ntTSL 2 BASIC30.65■■■□□ 2.5
CLTCL1P53675 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CLTCL1P53675 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
CLTCL1P53675 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CLTCL1P53675 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
CLTCL1P53675 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC30.64■■■□□ 2.5
CLTCL1P53675 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC30.64■■■□□ 2.5
CLTCL1P53675 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC30.64■■■□□ 2.5
CLTCL1P53675 RNA5SP413-201ENST00000516373 109 ntBASIC30.64■■■□□ 2.5
CLTCL1P53675 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC30.64■■■□□ 2.5
CLTCL1P53675 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC30.64■■■□□ 2.5
CLTCL1P53675 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC30.64■■■□□ 2.5
CLTCL1P53675 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC30.64■■■□□ 2.5
CLTCL1P53675 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC30.64■■■□□ 2.49
CLTCL1P53675 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC30.64■■■□□ 2.49
CLTCL1P53675 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC30.63■■■□□ 2.49
CLTCL1P53675 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
CLTCL1P53675 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC30.63■■■□□ 2.49
CLTCL1P53675 AL512625.2-201ENST00000417533 625 ntBASIC30.63■■■□□ 2.49
CLTCL1P53675 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC30.63■■■□□ 2.49
CLTCL1P53675 MIR4758-201ENST00000577688 71 ntBASIC30.63■■■□□ 2.49
CLTCL1P53675 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
CLTCL1P53675 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC30.63■■■□□ 2.49
CLTCL1P53675 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
CLTCL1P53675 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC30.63■■■□□ 2.49
CLTCL1P53675 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC30.62■■■□□ 2.49
CLTCL1P53675 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC30.62■■■□□ 2.49
CLTCL1P53675 BX276092.2-201ENST00000417668 665 ntBASIC30.62■■■□□ 2.49
CLTCL1P53675 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC30.62■■■□□ 2.49
CLTCL1P53675 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC30.62■■■□□ 2.49
CLTCL1P53675 RARRES2P4-201ENST00000514074 484 ntBASIC30.62■■■□□ 2.49
CLTCL1P53675 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC30.62■■■□□ 2.49
CLTCL1P53675 CD44-222ENST00000526025 1052 ntTSL 2 BASIC30.62■■■□□ 2.49
CLTCL1P53675 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC30.62■■■□□ 2.49
CLTCL1P53675 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC30.62■■■□□ 2.49
CLTCL1P53675 AC127496.7-201ENST00000625110 1798 ntBASIC30.62■■■□□ 2.49
CLTCL1P53675 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC30.62■■■□□ 2.49
CLTCL1P53675 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC30.62■■■□□ 2.49
CLTCL1P53675 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
CLTCL1P53675 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
CLTCL1P53675 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC30.61■■■□□ 2.49
CLTCL1P53675 AC026471.6-201ENST00000622954 1905 ntBASIC30.61■■■□□ 2.49
CLTCL1P53675 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
CLTCL1P53675 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC30.61■■■□□ 2.49
CLTCL1P53675 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
CLTCL1P53675 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
CLTCL1P53675 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
CLTCL1P53675 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC30.6■■■□□ 2.49
CLTCL1P53675 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
CLTCL1P53675 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
CLTCL1P53675 AC010980.2-201ENST00000587099 1412 ntBASIC30.6■■■□□ 2.49
CLTCL1P53675 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC30.6■■■□□ 2.49
CLTCL1P53675 ISCU-212ENST00000547005 795 ntTSL 3 BASIC30.6■■■□□ 2.49
CLTCL1P53675 AC120498.10-201ENST00000621827 505 ntBASIC30.6■■■□□ 2.49
CLTCL1P53675 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC30.6■■■□□ 2.49
CLTCL1P53675 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
CLTCL1P53675 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
CLTCL1P53675 AC080038.3-201ENST00000623346 1952 ntBASIC30.59■■■□□ 2.49
CLTCL1P53675 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC30.59■■■□□ 2.49
CLTCL1P53675 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC30.59■■■□□ 2.49
CLTCL1P53675 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC30.59■■■□□ 2.49
CLTCL1P53675 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC30.59■■■□□ 2.49
CLTCL1P53675 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
CLTCL1P53675 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC30.59■■■□□ 2.49
CLTCL1P53675 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC30.58■■■□□ 2.49
CLTCL1P53675 POU5F1P3-201ENST00000428824 1078 ntBASIC30.58■■■□□ 2.49
CLTCL1P53675 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC30.58■■■□□ 2.49
CLTCL1P53675 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC30.58■■■□□ 2.49
CLTCL1P53675 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
CLTCL1P53675 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
CLTCL1P53675 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC30.58■■■□□ 2.49
CLTCL1P53675 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC30.58■■■□□ 2.49
CLTCL1P53675 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
CLTCL1P53675 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms