Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.03■□□□□ 0.96
LIMK1P53667 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.03■□□□□ 0.96
LIMK1P53667 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIMK1P53667 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIMK1P53667 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC21.03■□□□□ 0.96
LIMK1P53667 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.03■□□□□ 0.96
LIMK1P53667 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIMK1P53667 AC093787.1-201ENST00000450396 207 ntBASIC21.03■□□□□ 0.96
LIMK1P53667 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC21.03■□□□□ 0.96
LIMK1P53667 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIMK1P53667 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIMK1P53667 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.03■□□□□ 0.96
LIMK1P53667 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21.03■□□□□ 0.96
LIMK1P53667 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.03■□□□□ 0.96
LIMK1P53667 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
LIMK1P53667 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
LIMK1P53667 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.03■□□□□ 0.96
LIMK1P53667 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIMK1P53667 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.02■□□□□ 0.96
LIMK1P53667 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
LIMK1P53667 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC21.02■□□□□ 0.96
LIMK1P53667 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
LIMK1P53667 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC21.02■□□□□ 0.96
LIMK1P53667 AC026366.1-201ENST00000488803 879 ntBASIC21.02■□□□□ 0.96
LIMK1P53667 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
LIMK1P53667 AC073912.3-201ENST00000624414 853 ntBASIC21.02■□□□□ 0.96
LIMK1P53667 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
LIMK1P53667 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
LIMK1P53667 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIMK1P53667 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.95
LIMK1P53667 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
LIMK1P53667 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
LIMK1P53667 ABCB10P4-201ENST00000566803 2184 ntBASIC21.02■□□□□ 0.95
LIMK1P53667 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
LIMK1P53667 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LIMK1P53667 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
LIMK1P53667 AC055733.4-201ENST00000638462 1354 ntBASIC21.01■□□□□ 0.95
LIMK1P53667 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMK1P53667 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LIMK1P53667 AC091874.3-201ENST00000512672 1195 ntBASIC21.01■□□□□ 0.95
LIMK1P53667 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.01■□□□□ 0.95
LIMK1P53667 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.01■□□□□ 0.95
LIMK1P53667 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LIMK1P53667 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMK1P53667 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LIMK1P53667 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMK1P53667 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMK1P53667 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
LIMK1P53667 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMK1P53667 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMK1P53667 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.01■□□□□ 0.95
LIMK1P53667 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
LIMK1P53667 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LIMK1P53667 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC21■□□□□ 0.95
LIMK1P53667 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LIMK1P53667 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21■□□□□ 0.95
LIMK1P53667 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
LIMK1P53667 MIR718-201ENST00000390190 70 ntBASIC21■□□□□ 0.95
LIMK1P53667 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC21■□□□□ 0.95
LIMK1P53667 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
LIMK1P53667 AC016405.3-201ENST00000607710 860 ntBASIC21■□□□□ 0.95
LIMK1P53667 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LIMK1P53667 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
LIMK1P53667 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LIMK1P53667 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LIMK1P53667 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.99■□□□□ 0.95
LIMK1P53667 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIMK1P53667 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LIMK1P53667 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
LIMK1P53667 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
LIMK1P53667 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.99■□□□□ 0.95
LIMK1P53667 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.99■□□□□ 0.95
LIMK1P53667 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
LIMK1P53667 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.99■□□□□ 0.95
LIMK1P53667 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LIMK1P53667 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.99■□□□□ 0.95
LIMK1P53667 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.99■□□□□ 0.95
LIMK1P53667 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LIMK1P53667 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.99■□□□□ 0.95
LIMK1P53667 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.99■□□□□ 0.95
LIMK1P53667 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LIMK1P53667 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMK1P53667 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
LIMK1P53667 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMK1P53667 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LIMK1P53667 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
LIMK1P53667 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.98■□□□□ 0.95
LIMK1P53667 UNC93B5-201ENST00000530315 699 ntBASIC20.98■□□□□ 0.95
LIMK1P53667 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.98■□□□□ 0.95
LIMK1P53667 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.98■□□□□ 0.95
LIMK1P53667 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.98■□□□□ 0.95
LIMK1P53667 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
LIMK1P53667 AC073648.6-201ENST00000641589 218 ntBASIC20.98■□□□□ 0.95
LIMK1P53667 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMK1P53667 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMK1P53667 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.97■□□□□ 0.95
LIMK1P53667 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
LIMK1P53667 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMK1P53667 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LIMK1P53667 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms