Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.58■□□□□ 0.56
COL8A1P27658 BX088651.1-201ENST00000540551 451 ntBASIC18.58■□□□□ 0.56
COL8A1P27658 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.58■□□□□ 0.56
COL8A1P27658 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.58■□□□□ 0.56
COL8A1P27658 CYP2T3P-201ENST00000601990 817 ntBASIC18.58■□□□□ 0.56
COL8A1P27658 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL8A1P27658 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL8A1P27658 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL8A1P27658 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL8A1P27658 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL8A1P27658 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
COL8A1P27658 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL8A1P27658 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL8A1P27658 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL8A1P27658 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL8A1P27658 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL8A1P27658 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.57■□□□□ 0.56
COL8A1P27658 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL8A1P27658 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC18.57■□□□□ 0.56
COL8A1P27658 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL8A1P27658 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.57■□□□□ 0.56
COL8A1P27658 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL8A1P27658 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.57■□□□□ 0.56
COL8A1P27658 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.57■□□□□ 0.56
COL8A1P27658 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL8A1P27658 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL8A1P27658 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
COL8A1P27658 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC18.56■□□□□ 0.56
COL8A1P27658 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL8A1P27658 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
COL8A1P27658 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL8A1P27658 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC18.56■□□□□ 0.56
COL8A1P27658 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL8A1P27658 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL8A1P27658 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL8A1P27658 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL8A1P27658 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL8A1P27658 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.56■□□□□ 0.56
COL8A1P27658 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.56■□□□□ 0.56
COL8A1P27658 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.56■□□□□ 0.56
COL8A1P27658 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL8A1P27658 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC18.56■□□□□ 0.56
COL8A1P27658 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
COL8A1P27658 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL8A1P27658 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.56■□□□□ 0.56
COL8A1P27658 AL445228.2-201ENST00000605589 952 ntBASIC18.56■□□□□ 0.56
COL8A1P27658 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
COL8A1P27658 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL8A1P27658 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL8A1P27658 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL8A1P27658 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL8A1P27658 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL8A1P27658 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL8A1P27658 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL8A1P27658 DUSP8P3-201ENST00000399571 1760 ntBASIC18.55■□□□□ 0.56
COL8A1P27658 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.55■□□□□ 0.56
COL8A1P27658 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.55■□□□□ 0.56
COL8A1P27658 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL8A1P27658 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL8A1P27658 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL8A1P27658 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL8A1P27658 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.55■□□□□ 0.56
COL8A1P27658 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL8A1P27658 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL8A1P27658 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC18.55■□□□□ 0.56
COL8A1P27658 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL8A1P27658 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.55■□□□□ 0.56
COL8A1P27658 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
COL8A1P27658 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.55■□□□□ 0.56
COL8A1P27658 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.55■□□□□ 0.56
COL8A1P27658 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC18.55■□□□□ 0.56
COL8A1P27658 AC133561.5-201ENST00000635547 218 ntBASIC18.55■□□□□ 0.56
COL8A1P27658 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
COL8A1P27658 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL8A1P27658 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
COL8A1P27658 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC18.55■□□□□ 0.56
COL8A1P27658 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL8A1P27658 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL8A1P27658 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL8A1P27658 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL8A1P27658 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL8A1P27658 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC18.54■□□□□ 0.56
COL8A1P27658 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL8A1P27658 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL8A1P27658 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.54■□□□□ 0.56
COL8A1P27658 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.54■□□□□ 0.56
COL8A1P27658 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL8A1P27658 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.54■□□□□ 0.56
COL8A1P27658 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
COL8A1P27658 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.54■□□□□ 0.56
COL8A1P27658 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.54■□□□□ 0.56
COL8A1P27658 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.54■□□□□ 0.56
COL8A1P27658 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
COL8A1P27658 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
COL8A1P27658 LINC00543-201ENST00000567234 1845 ntBASIC18.53■□□□□ 0.56
COL8A1P27658 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL8A1P27658 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL8A1P27658 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC18.53■□□□□ 0.56
COL8A1P27658 FXN-202ENST00000396364 980 ntTSL 5 BASIC18.53■□□□□ 0.56
COL8A1P27658 LSM12P1-201ENST00000411836 588 ntBASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms