Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
RB1P06400 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
RB1P06400 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
RB1P06400 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC22.62■■□□□ 1.21
RB1P06400 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
RB1P06400 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
RB1P06400 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
RB1P06400 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
RB1P06400 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC22.62■■□□□ 1.21
RB1P06400 SERPINH1P1-201ENST00000419794 1249 ntBASIC22.62■■□□□ 1.21
RB1P06400 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC22.62■■□□□ 1.21
RB1P06400 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC22.62■■□□□ 1.21
RB1P06400 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
RB1P06400 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC22.62■■□□□ 1.21
RB1P06400 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC22.62■■□□□ 1.21
RB1P06400 FGF8-207ENST00000618991 856 ntTSL 3 BASIC22.62■■□□□ 1.21
RB1P06400 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
RB1P06400 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC22.62■■□□□ 1.21
RB1P06400 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
RB1P06400 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
RB1P06400 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
RB1P06400 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
RB1P06400 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
RB1P06400 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC22.61■■□□□ 1.21
RB1P06400 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
RB1P06400 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
RB1P06400 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC22.61■■□□□ 1.21
RB1P06400 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
RB1P06400 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
RB1P06400 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
RB1P06400 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
RB1P06400 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
RB1P06400 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC22.6■■□□□ 1.21
RB1P06400 CASP6-205ENST00000505486 538 ntTSL 4 BASIC22.6■■□□□ 1.21
RB1P06400 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC22.6■■□□□ 1.21
RB1P06400 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
RB1P06400 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
RB1P06400 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
RB1P06400 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
RB1P06400 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC22.6■■□□□ 1.21
RB1P06400 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
RB1P06400 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
RB1P06400 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
RB1P06400 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC22.59■■□□□ 1.21
RB1P06400 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
RB1P06400 UNC93B4-201ENST00000505679 747 ntBASIC22.59■■□□□ 1.21
RB1P06400 AP003097.1-201ENST00000530657 1135 ntBASIC22.59■■□□□ 1.21
RB1P06400 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC22.59■■□□□ 1.21
RB1P06400 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
RB1P06400 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
RB1P06400 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
RB1P06400 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
RB1P06400 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
RB1P06400 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
RB1P06400 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
RB1P06400 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
RB1P06400 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
RB1P06400 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC22.58■■□□□ 1.21
RB1P06400 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC22.58■■□□□ 1.21
RB1P06400 THRA-202ENST00000394121 2260 ntTSL 2 BASIC22.58■■□□□ 1.21
RB1P06400 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
RB1P06400 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
RB1P06400 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
RB1P06400 LSM12P1-201ENST00000411836 588 ntBASIC22.58■■□□□ 1.21
RB1P06400 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC22.58■■□□□ 1.21
RB1P06400 OR2A1-AS1-201ENST00000462305 773 ntBASIC22.58■■□□□ 1.21
RB1P06400 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC22.58■■□□□ 1.21
RB1P06400 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC22.58■■□□□ 1.21
RB1P06400 CD44-222ENST00000526025 1052 ntTSL 2 BASIC22.58■■□□□ 1.21
RB1P06400 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC22.58■■□□□ 1.21
RB1P06400 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC22.58■■□□□ 1.21
RB1P06400 AC073648.6-201ENST00000641589 218 ntBASIC22.58■■□□□ 1.21
RB1P06400 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
RB1P06400 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC22.58■■□□□ 1.21
RB1P06400 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC22.58■■□□□ 1.21
RB1P06400 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
RB1P06400 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
RB1P06400 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC22.57■■□□□ 1.2
RB1P06400 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
RB1P06400 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC22.57■■□□□ 1.2
RB1P06400 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
RB1P06400 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC22.57■■□□□ 1.2
RB1P06400 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC22.57■■□□□ 1.2
RB1P06400 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC22.57■■□□□ 1.2
RB1P06400 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC22.56■■□□□ 1.2
RB1P06400 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
RB1P06400 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
RB1P06400 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC22.56■■□□□ 1.2
RB1P06400 UBE2SP1-201ENST00000450587 669 ntBASIC22.56■■□□□ 1.2
RB1P06400 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC22.56■■□□□ 1.2
RB1P06400 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC22.56■■□□□ 1.2
RB1P06400 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC22.56■■□□□ 1.2
RB1P06400 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC22.56■■□□□ 1.2
RB1P06400 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
RB1P06400 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
RB1P06400 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC22.56■■□□□ 1.2
RB1P06400 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC22.55■■□□□ 1.2
RB1P06400 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
RB1P06400 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
RB1P06400 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms