Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CACNA1AO00555 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC20.36■□□□□ 0.85
CACNA1AO00555 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.35■□□□□ 0.85
CACNA1AO00555 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC20.35■□□□□ 0.85
CACNA1AO00555 LSM12P1-201ENST00000411836 588 ntBASIC20.35■□□□□ 0.85
CACNA1AO00555 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CACNA1AO00555 AC124016.1-201ENST00000609552 612 ntBASIC20.35■□□□□ 0.85
CACNA1AO00555 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CACNA1AO00555 AC004263.2-201ENST00000617183 678 ntBASIC20.35■□□□□ 0.85
CACNA1AO00555 AC113410.3-201ENST00000623366 203 ntBASIC20.35■□□□□ 0.85
CACNA1AO00555 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CACNA1AO00555 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC20.35■□□□□ 0.85
CACNA1AO00555 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CACNA1AO00555 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CACNA1AO00555 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CACNA1AO00555 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.35■□□□□ 0.85
CACNA1AO00555 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.35■□□□□ 0.85
CACNA1AO00555 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CACNA1AO00555 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.35■□□□□ 0.85
CACNA1AO00555 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CACNA1AO00555 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CACNA1AO00555 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.34■□□□□ 0.85
CACNA1AO00555 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CACNA1AO00555 RBM17P2-201ENST00000616397 1405 ntBASIC20.34■□□□□ 0.85
CACNA1AO00555 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CACNA1AO00555 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CACNA1AO00555 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CACNA1AO00555 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC20.34■□□□□ 0.85
CACNA1AO00555 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CACNA1AO00555 AL591742.1-201ENST00000604433 565 ntBASIC20.34■□□□□ 0.85
CACNA1AO00555 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
CACNA1AO00555 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CACNA1AO00555 KRT18P56-201ENST00000507275 550 ntBASIC20.33■□□□□ 0.85
CACNA1AO00555 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
CACNA1AO00555 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CACNA1AO00555 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
CACNA1AO00555 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CACNA1AO00555 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.33■□□□□ 0.85
CACNA1AO00555 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.33■□□□□ 0.85
CACNA1AO00555 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.33■□□□□ 0.84
CACNA1AO00555 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.33■□□□□ 0.84
CACNA1AO00555 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.33■□□□□ 0.84
CACNA1AO00555 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CACNA1AO00555 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.33■□□□□ 0.84
CACNA1AO00555 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.33■□□□□ 0.84
CACNA1AO00555 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CACNA1AO00555 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CACNA1AO00555 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CACNA1AO00555 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CACNA1AO00555 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CACNA1AO00555 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CACNA1AO00555 AC073508.3-201ENST00000619697 1419 ntBASIC20.32■□□□□ 0.84
CACNA1AO00555 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CACNA1AO00555 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CACNA1AO00555 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CACNA1AO00555 AC239809.2-201ENST00000415381 517 ntBASIC20.32■□□□□ 0.84
CACNA1AO00555 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.32■□□□□ 0.84
CACNA1AO00555 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.32■□□□□ 0.84
CACNA1AO00555 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.32■□□□□ 0.84
CACNA1AO00555 HLA-L-211ENST00000482052 1765 ntBASIC20.32■□□□□ 0.84
CACNA1AO00555 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CACNA1AO00555 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CACNA1AO00555 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC20.31■□□□□ 0.84
CACNA1AO00555 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.31■□□□□ 0.84
CACNA1AO00555 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.31■□□□□ 0.84
CACNA1AO00555 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CACNA1AO00555 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.31■□□□□ 0.84
CACNA1AO00555 AC006557.6-201ENST00000623071 864 ntBASIC20.31■□□□□ 0.84
CACNA1AO00555 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.31■□□□□ 0.84
CACNA1AO00555 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.31■□□□□ 0.84
CACNA1AO00555 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CACNA1AO00555 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.31■□□□□ 0.84
CACNA1AO00555 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CACNA1AO00555 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.31■□□□□ 0.84
CACNA1AO00555 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.31■□□□□ 0.84
CACNA1AO00555 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.31■□□□□ 0.84
CACNA1AO00555 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CACNA1AO00555 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CACNA1AO00555 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.31■□□□□ 0.84
CACNA1AO00555 AC092368.3-202ENST00000574180 1591 ntBASIC20.31■□□□□ 0.84
CACNA1AO00555 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CACNA1AO00555 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CACNA1AO00555 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.3■□□□□ 0.84
CACNA1AO00555 CRYGFP-201ENST00000418459 633 ntBASIC20.3■□□□□ 0.84
CACNA1AO00555 NMU-205ENST00000511469 756 ntTSL 3 BASIC20.3■□□□□ 0.84
CACNA1AO00555 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
CACNA1AO00555 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1AO00555 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
CACNA1AO00555 AC005363.2-201ENST00000618631 242 ntBASIC20.3■□□□□ 0.84
CACNA1AO00555 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
CACNA1AO00555 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1AO00555 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CACNA1AO00555 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
CACNA1AO00555 TERF1P1-201ENST00000311003 1181 ntBASIC20.3■□□□□ 0.84
CACNA1AO00555 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.3■□□□□ 0.84
CACNA1AO00555 AC005521.1-201ENST00000393351 872 ntBASIC20.3■□□□□ 0.84
CACNA1AO00555 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.3■□□□□ 0.84
CACNA1AO00555 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1AO00555 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CACNA1AO00555 AC091076.1-201ENST00000610741 619 ntBASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms