Protein–RNA interactions for Protein: Q9Y546

LRRC42, Leucine-rich repeat-containing protein 42, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC42Q9Y546 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
LRRC42Q9Y546 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.09■□□□□ 0.81
LRRC42Q9Y546 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRRC42Q9Y546 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRRC42Q9Y546 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
LRRC42Q9Y546 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LRRC42Q9Y546 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
LRRC42Q9Y546 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LRRC42Q9Y546 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.81
LRRC42Q9Y546 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
LRRC42Q9Y546 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
LRRC42Q9Y546 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LRRC42Q9Y546 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.08■□□□□ 0.81
LRRC42Q9Y546 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.08■□□□□ 0.81
LRRC42Q9Y546 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
LRRC42Q9Y546 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LRRC42Q9Y546 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LRRC42Q9Y546 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LRRC42Q9Y546 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LRRC42Q9Y546 AC016575.1-201ENST00000607026 382 ntBASIC20.08■□□□□ 0.81
LRRC42Q9Y546 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
LRRC42Q9Y546 AC004408.2-201ENST00000623613 2777 ntBASIC20.08■□□□□ 0.8
LRRC42Q9Y546 AC116562.4-201ENST00000641316 2276 ntBASIC20.07■□□□□ 0.8
LRRC42Q9Y546 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRRC42Q9Y546 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRRC42Q9Y546 AP000974.1-201ENST00000623909 2387 ntBASIC20.07■□□□□ 0.8
LRRC42Q9Y546 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRRC42Q9Y546 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRRC42Q9Y546 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
LRRC42Q9Y546 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRRC42Q9Y546 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRRC42Q9Y546 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
LRRC42Q9Y546 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.07■□□□□ 0.8
LRRC42Q9Y546 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRRC42Q9Y546 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
LRRC42Q9Y546 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.07■□□□□ 0.8
LRRC42Q9Y546 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LRRC42Q9Y546 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.06■□□□□ 0.8
LRRC42Q9Y546 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRRC42Q9Y546 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRRC42Q9Y546 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRRC42Q9Y546 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.06■□□□□ 0.8
LRRC42Q9Y546 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRRC42Q9Y546 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.06■□□□□ 0.8
LRRC42Q9Y546 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRRC42Q9Y546 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
LRRC42Q9Y546 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.06■□□□□ 0.8
LRRC42Q9Y546 AC060814.1-201ENST00000554326 538 ntBASIC20.06■□□□□ 0.8
LRRC42Q9Y546 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.06■□□□□ 0.8
LRRC42Q9Y546 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
LRRC42Q9Y546 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LRRC42Q9Y546 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.06■□□□□ 0.8
LRRC42Q9Y546 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LRRC42Q9Y546 C17orf82-201ENST00000623772 1530 ntBASIC20.06■□□□□ 0.8
LRRC42Q9Y546 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.06■□□□□ 0.8
LRRC42Q9Y546 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LRRC42Q9Y546 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.05■□□□□ 0.8
LRRC42Q9Y546 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.05■□□□□ 0.8
LRRC42Q9Y546 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC42Q9Y546 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC20.05■□□□□ 0.8
LRRC42Q9Y546 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
LRRC42Q9Y546 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
LRRC42Q9Y546 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC42Q9Y546 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC42Q9Y546 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.05■□□□□ 0.8
LRRC42Q9Y546 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.05■□□□□ 0.8
LRRC42Q9Y546 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC42Q9Y546 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC42Q9Y546 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC42Q9Y546 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
LRRC42Q9Y546 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC42Q9Y546 AC006128.1-201ENST00000624704 1661 ntBASIC20.04■□□□□ 0.8
LRRC42Q9Y546 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC42Q9Y546 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.04■□□□□ 0.8
LRRC42Q9Y546 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.04■□□□□ 0.8
LRRC42Q9Y546 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC42Q9Y546 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
LRRC42Q9Y546 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC42Q9Y546 AC104564.3-201ENST00000582367 638 ntBASIC20.04■□□□□ 0.8
LRRC42Q9Y546 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC42Q9Y546 AC112907.3-201ENST00000577781 2400 ntBASIC20.04■□□□□ 0.8
LRRC42Q9Y546 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC42Q9Y546 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LRRC42Q9Y546 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC42Q9Y546 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC42Q9Y546 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC42Q9Y546 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC42Q9Y546 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC42Q9Y546 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC20.03■□□□□ 0.8
LRRC42Q9Y546 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.03■□□□□ 0.8
LRRC42Q9Y546 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.03■□□□□ 0.8
LRRC42Q9Y546 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LRRC42Q9Y546 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.03■□□□□ 0.8
LRRC42Q9Y546 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRRC42Q9Y546 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.02■□□□□ 0.8
LRRC42Q9Y546 AC026471.6-201ENST00000622954 1905 ntBASIC20.02■□□□□ 0.8
LRRC42Q9Y546 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRRC42Q9Y546 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LRRC42Q9Y546 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LRRC42Q9Y546 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms