Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VSX1Q9NZR4 AC008406.3-201ENST00000620001 1374 ntBASIC18.97■□□□□ 0.63
VSX1Q9NZR4 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.97■□□□□ 0.63
VSX1Q9NZR4 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC18.97■□□□□ 0.63
VSX1Q9NZR4 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VSX1Q9NZR4 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC18.97■□□□□ 0.63
VSX1Q9NZR4 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VSX1Q9NZR4 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VSX1Q9NZR4 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.97■□□□□ 0.63
VSX1Q9NZR4 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VSX1Q9NZR4 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VSX1Q9NZR4 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.97■□□□□ 0.63
VSX1Q9NZR4 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VSX1Q9NZR4 AC003102.1-202ENST00000563394 1796 ntBASIC18.96■□□□□ 0.63
VSX1Q9NZR4 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VSX1Q9NZR4 AP006587.3-201ENST00000525742 1516 ntBASIC18.96■□□□□ 0.63
VSX1Q9NZR4 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VSX1Q9NZR4 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
VSX1Q9NZR4 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.96■□□□□ 0.63
VSX1Q9NZR4 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VSX1Q9NZR4 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
VSX1Q9NZR4 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC18.96■□□□□ 0.63
VSX1Q9NZR4 IGHV3-19-201ENST00000521488 291 ntBASIC18.96■□□□□ 0.63
VSX1Q9NZR4 AC126544.1-201ENST00000580842 1059 ntBASIC18.96■□□□□ 0.63
VSX1Q9NZR4 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VSX1Q9NZR4 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC18.96■□□□□ 0.63
VSX1Q9NZR4 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VSX1Q9NZR4 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VSX1Q9NZR4 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.96■□□□□ 0.63
VSX1Q9NZR4 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VSX1Q9NZR4 FEM1AP4-201ENST00000443167 1987 ntBASIC18.95■□□□□ 0.62
VSX1Q9NZR4 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VSX1Q9NZR4 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.95■□□□□ 0.62
VSX1Q9NZR4 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VSX1Q9NZR4 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VSX1Q9NZR4 PEMT-206ENST00000435340 960 ntTSL 5 BASIC18.95■□□□□ 0.62
VSX1Q9NZR4 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC18.95■□□□□ 0.62
VSX1Q9NZR4 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC18.95■□□□□ 0.62
VSX1Q9NZR4 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
VSX1Q9NZR4 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC18.95■□□□□ 0.62
VSX1Q9NZR4 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VSX1Q9NZR4 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
VSX1Q9NZR4 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
VSX1Q9NZR4 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
VSX1Q9NZR4 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.95■□□□□ 0.62
VSX1Q9NZR4 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VSX1Q9NZR4 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VSX1Q9NZR4 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
VSX1Q9NZR4 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VSX1Q9NZR4 AC005229.4-201ENST00000610085 2198 ntBASIC18.94■□□□□ 0.62
VSX1Q9NZR4 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VSX1Q9NZR4 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC18.94■□□□□ 0.62
VSX1Q9NZR4 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC18.94■□□□□ 0.62
VSX1Q9NZR4 AICDA-202ENST00000537228 667 ntTSL 5 BASIC18.94■□□□□ 0.62
VSX1Q9NZR4 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
VSX1Q9NZR4 MPST-208ENST00000628507 698 ntTSL 5 BASIC18.94■□□□□ 0.62
VSX1Q9NZR4 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC18.94■□□□□ 0.62
VSX1Q9NZR4 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.94■□□□□ 0.62
VSX1Q9NZR4 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VSX1Q9NZR4 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
VSX1Q9NZR4 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
VSX1Q9NZR4 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VSX1Q9NZR4 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VSX1Q9NZR4 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.94■□□□□ 0.62
VSX1Q9NZR4 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC18.93■□□□□ 0.62
VSX1Q9NZR4 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VSX1Q9NZR4 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VSX1Q9NZR4 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VSX1Q9NZR4 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.93■□□□□ 0.62
VSX1Q9NZR4 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VSX1Q9NZR4 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
VSX1Q9NZR4 AC096631.2-201ENST00000436136 790 ntBASIC18.93■□□□□ 0.62
VSX1Q9NZR4 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC18.93■□□□□ 0.62
VSX1Q9NZR4 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VSX1Q9NZR4 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC18.93■□□□□ 0.62
VSX1Q9NZR4 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VSX1Q9NZR4 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VSX1Q9NZR4 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VSX1Q9NZR4 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VSX1Q9NZR4 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.92■□□□□ 0.62
VSX1Q9NZR4 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VSX1Q9NZR4 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
VSX1Q9NZR4 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VSX1Q9NZR4 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VSX1Q9NZR4 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VSX1Q9NZR4 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC18.92■□□□□ 0.62
VSX1Q9NZR4 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC18.92■□□□□ 0.62
VSX1Q9NZR4 AC106739.1-201ENST00000617035 715 ntBASIC18.92■□□□□ 0.62
VSX1Q9NZR4 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.92■□□□□ 0.62
VSX1Q9NZR4 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC18.91■□□□□ 0.62
VSX1Q9NZR4 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VSX1Q9NZR4 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VSX1Q9NZR4 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VSX1Q9NZR4 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VSX1Q9NZR4 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VSX1Q9NZR4 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
VSX1Q9NZR4 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC18.91■□□□□ 0.62
VSX1Q9NZR4 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VSX1Q9NZR4 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VSX1Q9NZR4 PBX2P1-201ENST00000493219 1291 ntBASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms