Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.73■□□□□ 0.75
USE1Q9NZ43 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
USE1Q9NZ43 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USE1Q9NZ43 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USE1Q9NZ43 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
USE1Q9NZ43 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC19.73■□□□□ 0.75
USE1Q9NZ43 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC19.73■□□□□ 0.75
USE1Q9NZ43 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
USE1Q9NZ43 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USE1Q9NZ43 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USE1Q9NZ43 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
USE1Q9NZ43 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
USE1Q9NZ43 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC19.73■□□□□ 0.75
USE1Q9NZ43 AL049796.1-201ENST00000565336 1766 ntBASIC19.72■□□□□ 0.75
USE1Q9NZ43 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USE1Q9NZ43 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USE1Q9NZ43 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
USE1Q9NZ43 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
USE1Q9NZ43 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC19.72■□□□□ 0.75
USE1Q9NZ43 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
USE1Q9NZ43 SENP5-202ENST00000419026 973 ntTSL 3 BASIC19.72■□□□□ 0.75
USE1Q9NZ43 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USE1Q9NZ43 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USE1Q9NZ43 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.72■□□□□ 0.75
USE1Q9NZ43 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.72■□□□□ 0.75
USE1Q9NZ43 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.72■□□□□ 0.75
USE1Q9NZ43 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USE1Q9NZ43 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
USE1Q9NZ43 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
USE1Q9NZ43 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.72■□□□□ 0.75
USE1Q9NZ43 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USE1Q9NZ43 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
USE1Q9NZ43 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USE1Q9NZ43 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
USE1Q9NZ43 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USE1Q9NZ43 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
USE1Q9NZ43 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.71■□□□□ 0.75
USE1Q9NZ43 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USE1Q9NZ43 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.71■□□□□ 0.75
USE1Q9NZ43 AC079089.2-201ENST00000531211 1277 ntBASIC19.71■□□□□ 0.75
USE1Q9NZ43 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC19.71■□□□□ 0.75
USE1Q9NZ43 NKILA-201ENST00000613231 537 ntTSL 4 BASIC19.71■□□□□ 0.75
USE1Q9NZ43 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USE1Q9NZ43 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USE1Q9NZ43 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USE1Q9NZ43 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USE1Q9NZ43 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
USE1Q9NZ43 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USE1Q9NZ43 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
USE1Q9NZ43 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USE1Q9NZ43 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USE1Q9NZ43 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USE1Q9NZ43 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
USE1Q9NZ43 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.7■□□□□ 0.74
USE1Q9NZ43 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
USE1Q9NZ43 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USE1Q9NZ43 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USE1Q9NZ43 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
USE1Q9NZ43 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
USE1Q9NZ43 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USE1Q9NZ43 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.7■□□□□ 0.74
USE1Q9NZ43 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
USE1Q9NZ43 AC007952.6-201ENST00000573168 2673 ntBASIC19.69■□□□□ 0.74
USE1Q9NZ43 AC003957.1-201ENST00000625108 2673 ntBASIC19.69■□□□□ 0.74
USE1Q9NZ43 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USE1Q9NZ43 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
USE1Q9NZ43 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USE1Q9NZ43 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USE1Q9NZ43 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
USE1Q9NZ43 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.69■□□□□ 0.74
USE1Q9NZ43 GABARAPL3-202ENST00000624044 1851 ntBASIC19.69■□□□□ 0.74
USE1Q9NZ43 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19.69■□□□□ 0.74
USE1Q9NZ43 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USE1Q9NZ43 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USE1Q9NZ43 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USE1Q9NZ43 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USE1Q9NZ43 TSPY13P-201ENST00000338964 914 ntBASIC19.69■□□□□ 0.74
USE1Q9NZ43 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC19.69■□□□□ 0.74
USE1Q9NZ43 ATP5G2P3-201ENST00000429083 425 ntBASIC19.69■□□□□ 0.74
USE1Q9NZ43 BHLHE23-202ENST00000612929 1109 ntBASIC19.69■□□□□ 0.74
USE1Q9NZ43 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.69■□□□□ 0.74
USE1Q9NZ43 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USE1Q9NZ43 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USE1Q9NZ43 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.69■□□□□ 0.74
USE1Q9NZ43 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USE1Q9NZ43 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
USE1Q9NZ43 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
USE1Q9NZ43 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
USE1Q9NZ43 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
USE1Q9NZ43 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USE1Q9NZ43 AC004987.1-201ENST00000428627 508 ntBASIC19.68■□□□□ 0.74
USE1Q9NZ43 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC19.68■□□□□ 0.74
USE1Q9NZ43 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
USE1Q9NZ43 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USE1Q9NZ43 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.68■□□□□ 0.74
USE1Q9NZ43 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USE1Q9NZ43 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
USE1Q9NZ43 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USE1Q9NZ43 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
USE1Q9NZ43 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms