Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
CLN6Q9NWW5 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLN6Q9NWW5 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLN6Q9NWW5 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CLN6Q9NWW5 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC19.36■□□□□ 0.69
CLN6Q9NWW5 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CLN6Q9NWW5 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CLN6Q9NWW5 AC092028.1-203ENST00000608262 953 ntBASIC19.36■□□□□ 0.69
CLN6Q9NWW5 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.36■□□□□ 0.69
CLN6Q9NWW5 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLN6Q9NWW5 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLN6Q9NWW5 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CLN6Q9NWW5 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLN6Q9NWW5 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLN6Q9NWW5 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CLN6Q9NWW5 C17orf82-201ENST00000623772 1530 ntBASIC19.35■□□□□ 0.69
CLN6Q9NWW5 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLN6Q9NWW5 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLN6Q9NWW5 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLN6Q9NWW5 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.35■□□□□ 0.69
CLN6Q9NWW5 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.35■□□□□ 0.69
CLN6Q9NWW5 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.35■□□□□ 0.69
CLN6Q9NWW5 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC19.35■□□□□ 0.69
CLN6Q9NWW5 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.35■□□□□ 0.69
CLN6Q9NWW5 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLN6Q9NWW5 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLN6Q9NWW5 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLN6Q9NWW5 OR7E47P-201ENST00000546390 1422 ntBASIC19.34■□□□□ 0.69
CLN6Q9NWW5 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
CLN6Q9NWW5 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLN6Q9NWW5 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CLN6Q9NWW5 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
CLN6Q9NWW5 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.34■□□□□ 0.69
CLN6Q9NWW5 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CLN6Q9NWW5 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC19.34■□□□□ 0.69
CLN6Q9NWW5 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CLN6Q9NWW5 PRTG-204ENST00000561292 833 ntTSL 3 BASIC19.34■□□□□ 0.69
CLN6Q9NWW5 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLN6Q9NWW5 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLN6Q9NWW5 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLN6Q9NWW5 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.34■□□□□ 0.69
CLN6Q9NWW5 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CLN6Q9NWW5 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLN6Q9NWW5 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CLN6Q9NWW5 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CLN6Q9NWW5 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.34■□□□□ 0.69
CLN6Q9NWW5 FEM1AP1-201ENST00000431297 1995 ntBASIC19.33■□□□□ 0.69
CLN6Q9NWW5 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
CLN6Q9NWW5 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.33■□□□□ 0.69
CLN6Q9NWW5 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CLN6Q9NWW5 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.33■□□□□ 0.69
CLN6Q9NWW5 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.33■□□□□ 0.69
CLN6Q9NWW5 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CLN6Q9NWW5 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CLN6Q9NWW5 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CLN6Q9NWW5 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
CLN6Q9NWW5 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC19.33■□□□□ 0.68
CLN6Q9NWW5 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
CLN6Q9NWW5 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
CLN6Q9NWW5 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.33■□□□□ 0.68
CLN6Q9NWW5 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLN6Q9NWW5 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
CLN6Q9NWW5 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.32■□□□□ 0.68
CLN6Q9NWW5 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLN6Q9NWW5 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLN6Q9NWW5 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLN6Q9NWW5 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
CLN6Q9NWW5 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CLN6Q9NWW5 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLN6Q9NWW5 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CLN6Q9NWW5 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC19.32■□□□□ 0.68
CLN6Q9NWW5 AL499627.2-201ENST00000606283 725 ntBASIC19.32■□□□□ 0.68
CLN6Q9NWW5 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CLN6Q9NWW5 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CLN6Q9NWW5 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLN6Q9NWW5 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLN6Q9NWW5 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CLN6Q9NWW5 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.32■□□□□ 0.68
CLN6Q9NWW5 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLN6Q9NWW5 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.32■□□□□ 0.68
CLN6Q9NWW5 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLN6Q9NWW5 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLN6Q9NWW5 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
CLN6Q9NWW5 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLN6Q9NWW5 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLN6Q9NWW5 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLN6Q9NWW5 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.31■□□□□ 0.68
CLN6Q9NWW5 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.31■□□□□ 0.68
CLN6Q9NWW5 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CLN6Q9NWW5 RNF146-205ENST00000477776 762 ntTSL 3 BASIC19.31■□□□□ 0.68
CLN6Q9NWW5 MTDHP2-201ENST00000601468 714 ntBASIC19.31■□□□□ 0.68
CLN6Q9NWW5 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLN6Q9NWW5 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLN6Q9NWW5 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLN6Q9NWW5 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLN6Q9NWW5 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.3■□□□□ 0.68
CLN6Q9NWW5 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CLN6Q9NWW5 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CLN6Q9NWW5 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CLN6Q9NWW5 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms