Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
CHMP1AQ9HD42 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC18.21■□□□□ 0.51
CHMP1AQ9HD42 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP1AQ9HD42 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP1AQ9HD42 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP1AQ9HD42 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.21■□□□□ 0.51
CHMP1AQ9HD42 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP1AQ9HD42 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP1AQ9HD42 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP1AQ9HD42 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CHMP1AQ9HD42 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
CHMP1AQ9HD42 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
CHMP1AQ9HD42 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.5
CHMP1AQ9HD42 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CHMP1AQ9HD42 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CHMP1AQ9HD42 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CHMP1AQ9HD42 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CHMP1AQ9HD42 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CHMP1AQ9HD42 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
CHMP1AQ9HD42 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CHMP1AQ9HD42 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CHMP1AQ9HD42 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CHMP1AQ9HD42 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CHMP1AQ9HD42 AL499627.2-201ENST00000606283 725 ntBASIC18.2■□□□□ 0.5
CHMP1AQ9HD42 AC241377.3-202ENST00000626088 1088 ntBASIC18.2■□□□□ 0.5
CHMP1AQ9HD42 AC241585.3-202ENST00000628937 1088 ntBASIC18.2■□□□□ 0.5
CHMP1AQ9HD42 AC245100.8-202ENST00000629247 1058 ntBASIC18.2■□□□□ 0.5
CHMP1AQ9HD42 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.2■□□□□ 0.5
CHMP1AQ9HD42 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CHMP1AQ9HD42 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CHMP1AQ9HD42 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CHMP1AQ9HD42 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CHMP1AQ9HD42 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CHMP1AQ9HD42 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHMP1AQ9HD42 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHMP1AQ9HD42 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHMP1AQ9HD42 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC18.19■□□□□ 0.5
CHMP1AQ9HD42 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CHMP1AQ9HD42 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHMP1AQ9HD42 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHMP1AQ9HD42 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHMP1AQ9HD42 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CHMP1AQ9HD42 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CHMP1AQ9HD42 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CHMP1AQ9HD42 AL451085.2-201ENST00000605085 799 ntBASIC18.19■□□□□ 0.5
CHMP1AQ9HD42 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHMP1AQ9HD42 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CHMP1AQ9HD42 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHMP1AQ9HD42 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CHMP1AQ9HD42 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
CHMP1AQ9HD42 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
CHMP1AQ9HD42 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC18.19■□□□□ 0.5
CHMP1AQ9HD42 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHMP1AQ9HD42 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP1AQ9HD42 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP1AQ9HD42 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CHMP1AQ9HD42 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP1AQ9HD42 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
CHMP1AQ9HD42 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP1AQ9HD42 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP1AQ9HD42 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CHMP1AQ9HD42 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP1AQ9HD42 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP1AQ9HD42 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.18■□□□□ 0.5
CHMP1AQ9HD42 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC18.18■□□□□ 0.5
CHMP1AQ9HD42 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP1AQ9HD42 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP1AQ9HD42 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CHMP1AQ9HD42 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC18.17■□□□□ 0.5
CHMP1AQ9HD42 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP1AQ9HD42 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CHMP1AQ9HD42 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CHMP1AQ9HD42 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP1AQ9HD42 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
CHMP1AQ9HD42 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
CHMP1AQ9HD42 KRT16P3-201ENST00000439127 1283 ntBASIC18.17■□□□□ 0.5
CHMP1AQ9HD42 UNC93B8-201ENST00000511903 705 ntBASIC18.17■□□□□ 0.5
CHMP1AQ9HD42 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC18.17■□□□□ 0.5
CHMP1AQ9HD42 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC18.17■□□□□ 0.5
CHMP1AQ9HD42 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CHMP1AQ9HD42 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC18.17■□□□□ 0.5
CHMP1AQ9HD42 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
CHMP1AQ9HD42 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.17■□□□□ 0.5
CHMP1AQ9HD42 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.17■□□□□ 0.5
CHMP1AQ9HD42 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CHMP1AQ9HD42 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP1AQ9HD42 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP1AQ9HD42 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.17■□□□□ 0.5
CHMP1AQ9HD42 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CHMP1AQ9HD42 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
CHMP1AQ9HD42 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP1AQ9HD42 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP1AQ9HD42 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP1AQ9HD42 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
CHMP1AQ9HD42 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.16■□□□□ 0.5
CHMP1AQ9HD42 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC18.16■□□□□ 0.5
CHMP1AQ9HD42 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP1AQ9HD42 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP1AQ9HD42 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CHMP1AQ9HD42 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms