Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
TRAIPQ9BWF2 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
TRAIPQ9BWF2 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC23.3■■□□□ 1.32
TRAIPQ9BWF2 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC23.3■■□□□ 1.32
TRAIPQ9BWF2 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
TRAIPQ9BWF2 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC23.3■■□□□ 1.32
TRAIPQ9BWF2 DUX4L16-201ENST00000555130 1264 ntBASIC23.3■■□□□ 1.32
TRAIPQ9BWF2 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC23.3■■□□□ 1.32
TRAIPQ9BWF2 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC23.3■■□□□ 1.32
TRAIPQ9BWF2 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
TRAIPQ9BWF2 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
TRAIPQ9BWF2 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
TRAIPQ9BWF2 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
TRAIPQ9BWF2 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC23.3■■□□□ 1.32
TRAIPQ9BWF2 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC23.29■■□□□ 1.32
TRAIPQ9BWF2 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC23.29■■□□□ 1.32
TRAIPQ9BWF2 AP006587.3-201ENST00000525742 1516 ntBASIC23.29■■□□□ 1.32
TRAIPQ9BWF2 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
TRAIPQ9BWF2 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
TRAIPQ9BWF2 PARP1-202ENST00000366792 553 ntTSL 3 BASIC23.29■■□□□ 1.32
TRAIPQ9BWF2 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC23.29■■□□□ 1.32
TRAIPQ9BWF2 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
TRAIPQ9BWF2 AC006970.2-201ENST00000450065 779 ntBASIC23.29■■□□□ 1.32
TRAIPQ9BWF2 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC23.29■■□□□ 1.32
TRAIPQ9BWF2 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
TRAIPQ9BWF2 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC23.29■■□□□ 1.32
TRAIPQ9BWF2 DENND3-207ENST00000518347 850 ntTSL 2 BASIC23.29■■□□□ 1.32
TRAIPQ9BWF2 EMC9-206ENST00000560403 872 ntTSL 2 BASIC23.29■■□□□ 1.32
TRAIPQ9BWF2 EEF1DP3-203ENST00000566025 782 ntBASIC23.29■■□□□ 1.32
TRAIPQ9BWF2 AC104771.1-201ENST00000603335 964 ntBASIC23.29■■□□□ 1.32
TRAIPQ9BWF2 AC231657.2-201ENST00000624556 255 ntBASIC23.29■■□□□ 1.32
TRAIPQ9BWF2 MYCNOS-205ENST00000641950 531 ntBASIC23.29■■□□□ 1.32
TRAIPQ9BWF2 CLDN5-201ENST00000403084 2357 ntBASIC23.29■■□□□ 1.32
TRAIPQ9BWF2 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
TRAIPQ9BWF2 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
TRAIPQ9BWF2 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
TRAIPQ9BWF2 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
TRAIPQ9BWF2 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
TRAIPQ9BWF2 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC23.28■■□□□ 1.32
TRAIPQ9BWF2 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC23.28■■□□□ 1.32
TRAIPQ9BWF2 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC23.28■■□□□ 1.32
TRAIPQ9BWF2 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC23.28■■□□□ 1.32
TRAIPQ9BWF2 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC23.28■■□□□ 1.32
TRAIPQ9BWF2 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
TRAIPQ9BWF2 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC23.28■■□□□ 1.32
TRAIPQ9BWF2 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
TRAIPQ9BWF2 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
TRAIPQ9BWF2 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
TRAIPQ9BWF2 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC23.28■■□□□ 1.32
TRAIPQ9BWF2 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
TRAIPQ9BWF2 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
TRAIPQ9BWF2 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
TRAIPQ9BWF2 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
TRAIPQ9BWF2 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC23.27■■□□□ 1.32
TRAIPQ9BWF2 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
TRAIPQ9BWF2 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
TRAIPQ9BWF2 AC053503.5-201ENST00000601508 636 ntBASIC23.27■■□□□ 1.32
TRAIPQ9BWF2 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC23.27■■□□□ 1.32
TRAIPQ9BWF2 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
TRAIPQ9BWF2 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
TRAIPQ9BWF2 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
TRAIPQ9BWF2 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
TRAIPQ9BWF2 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
TRAIPQ9BWF2 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
TRAIPQ9BWF2 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
TRAIPQ9BWF2 STK25-234ENST00000535007 2459 ntTSL 2 BASIC23.26■■□□□ 1.31
TRAIPQ9BWF2 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
TRAIPQ9BWF2 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
TRAIPQ9BWF2 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
TRAIPQ9BWF2 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC23.26■■□□□ 1.31
TRAIPQ9BWF2 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
TRAIPQ9BWF2 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
TRAIPQ9BWF2 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC23.26■■□□□ 1.31
TRAIPQ9BWF2 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC23.26■■□□□ 1.31
TRAIPQ9BWF2 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC23.26■■□□□ 1.31
TRAIPQ9BWF2 SLC7A5P1-201ENST00000568957 537 ntBASIC23.26■■□□□ 1.31
TRAIPQ9BWF2 PARP1-210ENST00000629232 477 ntTSL 5 BASIC23.26■■□□□ 1.31
TRAIPQ9BWF2 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC23.26■■□□□ 1.31
TRAIPQ9BWF2 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
TRAIPQ9BWF2 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC23.26■■□□□ 1.31
TRAIPQ9BWF2 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
TRAIPQ9BWF2 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
TRAIPQ9BWF2 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC23.25■■□□□ 1.31
TRAIPQ9BWF2 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
TRAIPQ9BWF2 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC23.25■■□□□ 1.31
TRAIPQ9BWF2 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
TRAIPQ9BWF2 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
TRAIPQ9BWF2 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC23.25■■□□□ 1.31
TRAIPQ9BWF2 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
TRAIPQ9BWF2 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
TRAIPQ9BWF2 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC23.25■■□□□ 1.31
TRAIPQ9BWF2 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
TRAIPQ9BWF2 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
TRAIPQ9BWF2 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
TRAIPQ9BWF2 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
TRAIPQ9BWF2 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
TRAIPQ9BWF2 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
TRAIPQ9BWF2 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC23.24■■□□□ 1.31
TRAIPQ9BWF2 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
TRAIPQ9BWF2 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms