Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CCDC28BQ9BUN5 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC28BQ9BUN5 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
CCDC28BQ9BUN5 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC28BQ9BUN5 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC28BQ9BUN5 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC28BQ9BUN5 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC28BQ9BUN5 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC28BQ9BUN5 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CCDC28BQ9BUN5 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC28BQ9BUN5 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.65■□□□□ 0.9
CCDC28BQ9BUN5 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.65■□□□□ 0.9
CCDC28BQ9BUN5 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.65■□□□□ 0.9
CCDC28BQ9BUN5 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC28BQ9BUN5 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CCDC28BQ9BUN5 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.64■□□□□ 0.9
CCDC28BQ9BUN5 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CCDC28BQ9BUN5 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.64■□□□□ 0.9
CCDC28BQ9BUN5 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC28BQ9BUN5 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC28BQ9BUN5 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC28BQ9BUN5 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC28BQ9BUN5 AL117332.1-201ENST00000622628 974 ntBASIC20.64■□□□□ 0.89
CCDC28BQ9BUN5 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC28BQ9BUN5 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC28BQ9BUN5 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC28BQ9BUN5 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.64■□□□□ 0.89
CCDC28BQ9BUN5 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC28BQ9BUN5 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
CCDC28BQ9BUN5 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CCDC28BQ9BUN5 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CCDC28BQ9BUN5 FEM1AP1-201ENST00000431297 1995 ntBASIC20.63■□□□□ 0.89
CCDC28BQ9BUN5 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.63■□□□□ 0.89
CCDC28BQ9BUN5 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC28BQ9BUN5 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
CCDC28BQ9BUN5 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC28BQ9BUN5 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CCDC28BQ9BUN5 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC28BQ9BUN5 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.63■□□□□ 0.89
CCDC28BQ9BUN5 LINC01006-201ENST00000333319 2292 ntBASIC20.63■□□□□ 0.89
CCDC28BQ9BUN5 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC28BQ9BUN5 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC28BQ9BUN5 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.63■□□□□ 0.89
CCDC28BQ9BUN5 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC28BQ9BUN5 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC28BQ9BUN5 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
CCDC28BQ9BUN5 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.62■□□□□ 0.89
CCDC28BQ9BUN5 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC28BQ9BUN5 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC28BQ9BUN5 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.62■□□□□ 0.89
CCDC28BQ9BUN5 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC28BQ9BUN5 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC28BQ9BUN5 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.62■□□□□ 0.89
CCDC28BQ9BUN5 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC28BQ9BUN5 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
CCDC28BQ9BUN5 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC28BQ9BUN5 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC28BQ9BUN5 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC28BQ9BUN5 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
CCDC28BQ9BUN5 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC28BQ9BUN5 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.62■□□□□ 0.89
CCDC28BQ9BUN5 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC28BQ9BUN5 MIR4787-201ENST00000607364 84 ntBASIC20.62■□□□□ 0.89
CCDC28BQ9BUN5 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC28BQ9BUN5 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC28BQ9BUN5 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CCDC28BQ9BUN5 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC28BQ9BUN5 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC28BQ9BUN5 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC28BQ9BUN5 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC28BQ9BUN5 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
CCDC28BQ9BUN5 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
CCDC28BQ9BUN5 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC28BQ9BUN5 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC28BQ9BUN5 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC28BQ9BUN5 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC28BQ9BUN5 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CCDC28BQ9BUN5 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CCDC28BQ9BUN5 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.61■□□□□ 0.89
CCDC28BQ9BUN5 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC28BQ9BUN5 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC28BQ9BUN5 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.61■□□□□ 0.89
CCDC28BQ9BUN5 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
CCDC28BQ9BUN5 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC28BQ9BUN5 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC28BQ9BUN5 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC28BQ9BUN5 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC28BQ9BUN5 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC28BQ9BUN5 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
CCDC28BQ9BUN5 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC28BQ9BUN5 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC28BQ9BUN5 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC28BQ9BUN5 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC28BQ9BUN5 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
CCDC28BQ9BUN5 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC28BQ9BUN5 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC28BQ9BUN5 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC28BQ9BUN5 pRNA.6-201ENST00000610482 90 ntBASIC20.6■□□□□ 0.89
CCDC28BQ9BUN5 pRNA.5-201ENST00000612139 90 ntBASIC20.6■□□□□ 0.89
CCDC28BQ9BUN5 pRNA.11-201ENST00000618423 90 ntBASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms