Protein–RNA interactions for Protein: Q9BT78

COPS4, COP9 signalosome complex subunit 4, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPS4Q9BT78 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COPS4Q9BT78 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
COPS4Q9BT78 FEM1AP1-201ENST00000431297 1995 ntBASIC19.43■□□□□ 0.7
COPS4Q9BT78 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
COPS4Q9BT78 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
COPS4Q9BT78 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COPS4Q9BT78 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.43■□□□□ 0.7
COPS4Q9BT78 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COPS4Q9BT78 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
COPS4Q9BT78 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.43■□□□□ 0.7
COPS4Q9BT78 AC009102.2-201ENST00000606772 1639 ntBASIC19.43■□□□□ 0.7
COPS4Q9BT78 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COPS4Q9BT78 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
COPS4Q9BT78 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COPS4Q9BT78 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.42■□□□□ 0.7
COPS4Q9BT78 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
COPS4Q9BT78 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COPS4Q9BT78 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
COPS4Q9BT78 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.42■□□□□ 0.7
COPS4Q9BT78 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COPS4Q9BT78 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
COPS4Q9BT78 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COPS4Q9BT78 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COPS4Q9BT78 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COPS4Q9BT78 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
COPS4Q9BT78 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
COPS4Q9BT78 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
COPS4Q9BT78 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COPS4Q9BT78 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.41■□□□□ 0.7
COPS4Q9BT78 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
COPS4Q9BT78 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.41■□□□□ 0.7
COPS4Q9BT78 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
COPS4Q9BT78 LSM4-201ENST00000252816 986 ntTSL 2 BASIC19.41■□□□□ 0.7
COPS4Q9BT78 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC19.41■□□□□ 0.7
COPS4Q9BT78 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COPS4Q9BT78 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC19.41■□□□□ 0.7
COPS4Q9BT78 NKILA-201ENST00000613231 537 ntTSL 4 BASIC19.41■□□□□ 0.7
COPS4Q9BT78 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COPS4Q9BT78 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
COPS4Q9BT78 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COPS4Q9BT78 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COPS4Q9BT78 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
COPS4Q9BT78 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COPS4Q9BT78 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.41■□□□□ 0.7
COPS4Q9BT78 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COPS4Q9BT78 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COPS4Q9BT78 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COPS4Q9BT78 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COPS4Q9BT78 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COPS4Q9BT78 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COPS4Q9BT78 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COPS4Q9BT78 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.4■□□□□ 0.7
COPS4Q9BT78 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
COPS4Q9BT78 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COPS4Q9BT78 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COPS4Q9BT78 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
COPS4Q9BT78 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COPS4Q9BT78 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COPS4Q9BT78 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COPS4Q9BT78 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COPS4Q9BT78 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COPS4Q9BT78 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COPS4Q9BT78 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
COPS4Q9BT78 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.4■□□□□ 0.7
COPS4Q9BT78 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
COPS4Q9BT78 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
COPS4Q9BT78 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.39■□□□□ 0.7
COPS4Q9BT78 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC19.39■□□□□ 0.7
COPS4Q9BT78 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COPS4Q9BT78 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COPS4Q9BT78 CREM-229ENST00000474362 1030 ntTSL 2 BASIC19.39■□□□□ 0.69
COPS4Q9BT78 UNC93B8-201ENST00000511903 705 ntBASIC19.39■□□□□ 0.69
COPS4Q9BT78 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COPS4Q9BT78 AC104564.3-201ENST00000582367 638 ntBASIC19.39■□□□□ 0.69
COPS4Q9BT78 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COPS4Q9BT78 AC007952.6-201ENST00000573168 2673 ntBASIC19.39■□□□□ 0.69
COPS4Q9BT78 AC003957.1-201ENST00000625108 2673 ntBASIC19.39■□□□□ 0.69
COPS4Q9BT78 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
COPS4Q9BT78 RNF165-205ENST00000588679 2904 ntBASIC19.39■□□□□ 0.69
COPS4Q9BT78 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COPS4Q9BT78 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
COPS4Q9BT78 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COPS4Q9BT78 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COPS4Q9BT78 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
COPS4Q9BT78 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COPS4Q9BT78 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.39■□□□□ 0.69
COPS4Q9BT78 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COPS4Q9BT78 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COPS4Q9BT78 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COPS4Q9BT78 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
COPS4Q9BT78 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COPS4Q9BT78 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COPS4Q9BT78 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COPS4Q9BT78 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COPS4Q9BT78 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
COPS4Q9BT78 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COPS4Q9BT78 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COPS4Q9BT78 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
COPS4Q9BT78 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.38■□□□□ 0.69
COPS4Q9BT78 MIR6724-1-201ENST00000616420 92 ntBASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms