Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC22.01■■□□□ 1.11
TTC28Q96AY4 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC22.01■■□□□ 1.11
TTC28Q96AY4 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TTC28Q96AY4 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
TTC28Q96AY4 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC22■■□□□ 1.11
TTC28Q96AY4 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TTC28Q96AY4 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
TTC28Q96AY4 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TTC28Q96AY4 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC22■■□□□ 1.11
TTC28Q96AY4 AC133681.1-201ENST00000465482 601 ntBASIC22■■□□□ 1.11
TTC28Q96AY4 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
TTC28Q96AY4 TOLLIP-AS1-201ENST00000530897 939 ntBASIC22■■□□□ 1.11
TTC28Q96AY4 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
TTC28Q96AY4 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TTC28Q96AY4 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TTC28Q96AY4 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
TTC28Q96AY4 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC22■■□□□ 1.11
TTC28Q96AY4 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC22■■□□□ 1.11
TTC28Q96AY4 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
TTC28Q96AY4 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
TTC28Q96AY4 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
TTC28Q96AY4 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
TTC28Q96AY4 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TTC28Q96AY4 POM121L13P-201ENST00000422362 380 ntBASIC21.99■■□□□ 1.11
TTC28Q96AY4 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
TTC28Q96AY4 AP003071.4-201ENST00000562276 1284 ntBASIC21.99■■□□□ 1.11
TTC28Q96AY4 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TTC28Q96AY4 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
TTC28Q96AY4 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.99■■□□□ 1.11
TTC28Q96AY4 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TTC28Q96AY4 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TTC28Q96AY4 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
TTC28Q96AY4 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC21.99■■□□□ 1.11
TTC28Q96AY4 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
TTC28Q96AY4 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC21.98■■□□□ 1.11
TTC28Q96AY4 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
TTC28Q96AY4 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.98■■□□□ 1.11
TTC28Q96AY4 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC21.98■■□□□ 1.11
TTC28Q96AY4 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC21.98■■□□□ 1.11
TTC28Q96AY4 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC21.98■■□□□ 1.11
TTC28Q96AY4 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
TTC28Q96AY4 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC21.98■■□□□ 1.11
TTC28Q96AY4 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC21.98■■□□□ 1.11
TTC28Q96AY4 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC21.98■■□□□ 1.11
TTC28Q96AY4 USF2-205ENST00000594064 1179 ntTSL 2 BASIC21.98■■□□□ 1.11
TTC28Q96AY4 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TTC28Q96AY4 PENK-204ENST00000518770 863 ntTSL 2 BASIC21.97■■□□□ 1.11
TTC28Q96AY4 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TTC28Q96AY4 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TTC28Q96AY4 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
TTC28Q96AY4 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
TTC28Q96AY4 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC21.97■■□□□ 1.11
TTC28Q96AY4 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC21.97■■□□□ 1.11
TTC28Q96AY4 KRT17P1-201ENST00000399211 1546 ntBASIC21.97■■□□□ 1.11
TTC28Q96AY4 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.96■■□□□ 1.11
TTC28Q96AY4 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.96■■□□□ 1.11
TTC28Q96AY4 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.96■■□□□ 1.11
TTC28Q96AY4 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TTC28Q96AY4 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TTC28Q96AY4 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TTC28Q96AY4 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
TTC28Q96AY4 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TTC28Q96AY4 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.96■■□□□ 1.11
TTC28Q96AY4 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TTC28Q96AY4 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.96■■□□□ 1.11
TTC28Q96AY4 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TTC28Q96AY4 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TTC28Q96AY4 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
TTC28Q96AY4 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TTC28Q96AY4 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TTC28Q96AY4 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
TTC28Q96AY4 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.96■■□□□ 1.11
TTC28Q96AY4 DUSP5P1-201ENST00000441325 1139 ntBASIC21.96■■□□□ 1.11
TTC28Q96AY4 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC21.96■■□□□ 1.11
TTC28Q96AY4 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.96■■□□□ 1.11
TTC28Q96AY4 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC21.96■■□□□ 1.11
TTC28Q96AY4 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC21.96■■□□□ 1.11
TTC28Q96AY4 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
TTC28Q96AY4 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
TTC28Q96AY4 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.95■■□□□ 1.11
TTC28Q96AY4 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
TTC28Q96AY4 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.95■■□□□ 1.1
TTC28Q96AY4 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.95■■□□□ 1.1
TTC28Q96AY4 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.95■■□□□ 1.1
TTC28Q96AY4 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.95■■□□□ 1.1
TTC28Q96AY4 MTDHP1-201ENST00000605323 784 ntBASIC21.95■■□□□ 1.1
TTC28Q96AY4 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
TTC28Q96AY4 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
TTC28Q96AY4 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TTC28Q96AY4 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
TTC28Q96AY4 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
TTC28Q96AY4 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
TTC28Q96AY4 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
TTC28Q96AY4 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
TTC28Q96AY4 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC21.95■■□□□ 1.1
TTC28Q96AY4 DUT-205ENST00000558813 769 ntTSL 2 BASIC21.95■■□□□ 1.1
TTC28Q96AY4 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC21.95■■□□□ 1.1
TTC28Q96AY4 METTL23-204ENST00000586752 904 ntTSL 2 BASIC21.95■■□□□ 1.1
TTC28Q96AY4 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.94■■□□□ 1.1
TTC28Q96AY4 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms