Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
PTP4A1Q93096 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.08■□□□□ 0.65
PTP4A1Q93096 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
PTP4A1Q93096 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.08■□□□□ 0.64
PTP4A1Q93096 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC19.08■□□□□ 0.64
PTP4A1Q93096 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.08■□□□□ 0.64
PTP4A1Q93096 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTP4A1Q93096 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PTP4A1Q93096 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.08■□□□□ 0.64
PTP4A1Q93096 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTP4A1Q93096 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTP4A1Q93096 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
PTP4A1Q93096 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
PTP4A1Q93096 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PTP4A1Q93096 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTP4A1Q93096 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTP4A1Q93096 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTP4A1Q93096 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.07■□□□□ 0.64
PTP4A1Q93096 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.07■□□□□ 0.64
PTP4A1Q93096 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
PTP4A1Q93096 AC092667.1-201ENST00000434301 2586 ntBASIC19.07■□□□□ 0.64
PTP4A1Q93096 SYT6-210ENST00000641643 1587 ntBASIC19.06■□□□□ 0.64
PTP4A1Q93096 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.06■□□□□ 0.64
PTP4A1Q93096 AC003102.1-202ENST00000563394 1796 ntBASIC19.06■□□□□ 0.64
PTP4A1Q93096 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
PTP4A1Q93096 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTP4A1Q93096 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTP4A1Q93096 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.06■□□□□ 0.64
PTP4A1Q93096 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.06■□□□□ 0.64
PTP4A1Q93096 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.06■□□□□ 0.64
PTP4A1Q93096 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
PTP4A1Q93096 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PTP4A1Q93096 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PTP4A1Q93096 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTP4A1Q93096 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTP4A1Q93096 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTP4A1Q93096 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTP4A1Q93096 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTP4A1Q93096 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.06■□□□□ 0.64
PTP4A1Q93096 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTP4A1Q93096 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTP4A1Q93096 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.05■□□□□ 0.64
PTP4A1Q93096 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.05■□□□□ 0.64
PTP4A1Q93096 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PTP4A1Q93096 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.05■□□□□ 0.64
PTP4A1Q93096 AL138724.1-201ENST00000606771 1088 ntBASIC19.05■□□□□ 0.64
PTP4A1Q93096 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
PTP4A1Q93096 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.05■□□□□ 0.64
PTP4A1Q93096 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PTP4A1Q93096 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
PTP4A1Q93096 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTP4A1Q93096 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.04■□□□□ 0.64
PTP4A1Q93096 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PTP4A1Q93096 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
PTP4A1Q93096 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTP4A1Q93096 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTP4A1Q93096 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTP4A1Q93096 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
PTP4A1Q93096 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
PTP4A1Q93096 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
PTP4A1Q93096 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
PTP4A1Q93096 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PTP4A1Q93096 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.04■□□□□ 0.64
PTP4A1Q93096 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTP4A1Q93096 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.04■□□□□ 0.64
PTP4A1Q93096 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTP4A1Q93096 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.04■□□□□ 0.64
PTP4A1Q93096 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTP4A1Q93096 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
PTP4A1Q93096 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTP4A1Q93096 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
PTP4A1Q93096 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.03■□□□□ 0.64
PTP4A1Q93096 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTP4A1Q93096 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTP4A1Q93096 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTP4A1Q93096 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTP4A1Q93096 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTP4A1Q93096 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTP4A1Q93096 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTP4A1Q93096 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTP4A1Q93096 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC19.03■□□□□ 0.64
PTP4A1Q93096 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTP4A1Q93096 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
PTP4A1Q93096 AP004607.7-201ENST00000527152 1677 ntBASIC19.03■□□□□ 0.64
PTP4A1Q93096 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
PTP4A1Q93096 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTP4A1Q93096 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTP4A1Q93096 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTP4A1Q93096 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
PTP4A1Q93096 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.02■□□□□ 0.64
PTP4A1Q93096 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.02■□□□□ 0.64
PTP4A1Q93096 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTP4A1Q93096 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTP4A1Q93096 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PTP4A1Q93096 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTP4A1Q93096 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.02■□□□□ 0.64
PTP4A1Q93096 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTP4A1Q93096 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
PTP4A1Q93096 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.02■□□□□ 0.64
PTP4A1Q93096 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms