Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CLIP4Q8N3C7 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLIP4Q8N3C7 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CLIP4Q8N3C7 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.86■□□□□ 0.77
CLIP4Q8N3C7 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.86■□□□□ 0.77
CLIP4Q8N3C7 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CLIP4Q8N3C7 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CLIP4Q8N3C7 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.86■□□□□ 0.77
CLIP4Q8N3C7 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
CLIP4Q8N3C7 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLIP4Q8N3C7 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLIP4Q8N3C7 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CLIP4Q8N3C7 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.85■□□□□ 0.77
CLIP4Q8N3C7 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.85■□□□□ 0.77
CLIP4Q8N3C7 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLIP4Q8N3C7 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
CLIP4Q8N3C7 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
CLIP4Q8N3C7 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC19.85■□□□□ 0.77
CLIP4Q8N3C7 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLIP4Q8N3C7 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLIP4Q8N3C7 SLC47A1P1-202ENST00000449666 945 ntBASIC19.85■□□□□ 0.77
CLIP4Q8N3C7 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.85■□□□□ 0.77
CLIP4Q8N3C7 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLIP4Q8N3C7 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CLIP4Q8N3C7 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.85■□□□□ 0.77
CLIP4Q8N3C7 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.84■□□□□ 0.77
CLIP4Q8N3C7 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CLIP4Q8N3C7 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CLIP4Q8N3C7 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.84■□□□□ 0.77
CLIP4Q8N3C7 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLIP4Q8N3C7 AC087239.1-201ENST00000622671 572 ntBASIC19.84■□□□□ 0.77
CLIP4Q8N3C7 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLIP4Q8N3C7 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLIP4Q8N3C7 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CLIP4Q8N3C7 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CLIP4Q8N3C7 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CLIP4Q8N3C7 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
CLIP4Q8N3C7 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.83■□□□□ 0.77
CLIP4Q8N3C7 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CLIP4Q8N3C7 OXCT2P1-201ENST00000447263 1535 ntBASIC19.83■□□□□ 0.77
CLIP4Q8N3C7 AC131212.1-201ENST00000613771 668 ntBASIC19.83■□□□□ 0.77
CLIP4Q8N3C7 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CLIP4Q8N3C7 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CLIP4Q8N3C7 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CLIP4Q8N3C7 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
CLIP4Q8N3C7 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
CLIP4Q8N3C7 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CLIP4Q8N3C7 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLIP4Q8N3C7 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLIP4Q8N3C7 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLIP4Q8N3C7 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLIP4Q8N3C7 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CLIP4Q8N3C7 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLIP4Q8N3C7 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.82■□□□□ 0.76
CLIP4Q8N3C7 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
CLIP4Q8N3C7 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLIP4Q8N3C7 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CLIP4Q8N3C7 AC244015.2-201ENST00000616358 1861 ntBASIC19.82■□□□□ 0.76
CLIP4Q8N3C7 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP4Q8N3C7 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP4Q8N3C7 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.81■□□□□ 0.76
CLIP4Q8N3C7 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP4Q8N3C7 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.81■□□□□ 0.76
CLIP4Q8N3C7 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP4Q8N3C7 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP4Q8N3C7 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP4Q8N3C7 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP4Q8N3C7 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP4Q8N3C7 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP4Q8N3C7 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP4Q8N3C7 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP4Q8N3C7 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP4Q8N3C7 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP4Q8N3C7 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP4Q8N3C7 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.81■□□□□ 0.76
CLIP4Q8N3C7 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP4Q8N3C7 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CLIP4Q8N3C7 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLIP4Q8N3C7 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
CLIP4Q8N3C7 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLIP4Q8N3C7 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.8■□□□□ 0.76
CLIP4Q8N3C7 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLIP4Q8N3C7 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
CLIP4Q8N3C7 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CLIP4Q8N3C7 UNC93B3-201ENST00000308076 687 ntBASIC19.8■□□□□ 0.76
CLIP4Q8N3C7 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.8■□□□□ 0.76
CLIP4Q8N3C7 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.8■□□□□ 0.76
CLIP4Q8N3C7 AP005435.1-201ENST00000529293 1178 ntBASIC19.8■□□□□ 0.76
CLIP4Q8N3C7 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
CLIP4Q8N3C7 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.8■□□□□ 0.76
CLIP4Q8N3C7 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CLIP4Q8N3C7 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLIP4Q8N3C7 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CLIP4Q8N3C7 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLIP4Q8N3C7 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
CLIP4Q8N3C7 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.8■□□□□ 0.76
CLIP4Q8N3C7 AC005229.4-201ENST00000610085 2198 ntBASIC19.8■□□□□ 0.76
CLIP4Q8N3C7 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
CLIP4Q8N3C7 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CLIP4Q8N3C7 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms