Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CCDC65Q8IXS2 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC23.62■■□□□ 1.37
CCDC65Q8IXS2 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CCDC65Q8IXS2 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CCDC65Q8IXS2 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CCDC65Q8IXS2 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC23.62■■□□□ 1.37
CCDC65Q8IXS2 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CCDC65Q8IXS2 AC055733.4-201ENST00000638462 1354 ntBASIC23.62■■□□□ 1.37
CCDC65Q8IXS2 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
CCDC65Q8IXS2 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC65Q8IXS2 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC65Q8IXS2 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC65Q8IXS2 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC65Q8IXS2 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC65Q8IXS2 NT5C3AP1-201ENST00000394500 1012 ntBASIC23.61■■□□□ 1.37
CCDC65Q8IXS2 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC23.61■■□□□ 1.37
CCDC65Q8IXS2 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC65Q8IXS2 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC65Q8IXS2 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC23.61■■□□□ 1.37
CCDC65Q8IXS2 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC65Q8IXS2 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC65Q8IXS2 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC23.61■■□□□ 1.37
CCDC65Q8IXS2 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC65Q8IXS2 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC65Q8IXS2 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
CCDC65Q8IXS2 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC23.6■■□□□ 1.37
CCDC65Q8IXS2 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
CCDC65Q8IXS2 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
CCDC65Q8IXS2 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC65Q8IXS2 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
CCDC65Q8IXS2 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC23.6■■□□□ 1.37
CCDC65Q8IXS2 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC65Q8IXS2 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC23.6■■□□□ 1.37
CCDC65Q8IXS2 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC23.6■■□□□ 1.37
CCDC65Q8IXS2 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC23.6■■□□□ 1.37
CCDC65Q8IXS2 MIR6084-201ENST00000622012 110 ntBASIC23.6■■□□□ 1.37
CCDC65Q8IXS2 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC65Q8IXS2 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC23.6■■□□□ 1.37
CCDC65Q8IXS2 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
CCDC65Q8IXS2 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC65Q8IXS2 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
CCDC65Q8IXS2 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC23.59■■□□□ 1.37
CCDC65Q8IXS2 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC65Q8IXS2 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC65Q8IXS2 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC23.59■■□□□ 1.37
CCDC65Q8IXS2 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC65Q8IXS2 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC23.59■■□□□ 1.37
CCDC65Q8IXS2 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC23.59■■□□□ 1.37
CCDC65Q8IXS2 MFF-203ENST00000349901 1716 ntTSL 2 BASIC23.59■■□□□ 1.37
CCDC65Q8IXS2 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC65Q8IXS2 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.37
CCDC65Q8IXS2 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CCDC65Q8IXS2 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CCDC65Q8IXS2 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC23.58■■□□□ 1.37
CCDC65Q8IXS2 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CCDC65Q8IXS2 CLDN5-201ENST00000403084 2357 ntBASIC23.58■■□□□ 1.37
CCDC65Q8IXS2 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.36
CCDC65Q8IXS2 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC23.58■■□□□ 1.36
CCDC65Q8IXS2 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC23.58■■□□□ 1.36
CCDC65Q8IXS2 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.36
CCDC65Q8IXS2 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
CCDC65Q8IXS2 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC65Q8IXS2 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC23.57■■□□□ 1.36
CCDC65Q8IXS2 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC65Q8IXS2 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC23.57■■□□□ 1.36
CCDC65Q8IXS2 FXN-202ENST00000396364 980 ntTSL 5 BASIC23.57■■□□□ 1.36
CCDC65Q8IXS2 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC65Q8IXS2 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC23.57■■□□□ 1.36
CCDC65Q8IXS2 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC23.57■■□□□ 1.36
CCDC65Q8IXS2 TPRG1LP1-201ENST00000598702 760 ntBASIC23.57■■□□□ 1.36
CCDC65Q8IXS2 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC65Q8IXS2 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC65Q8IXS2 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC65Q8IXS2 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC65Q8IXS2 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC23.57■■□□□ 1.36
CCDC65Q8IXS2 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC65Q8IXS2 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC23.56■■□□□ 1.36
CCDC65Q8IXS2 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC65Q8IXS2 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC65Q8IXS2 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC65Q8IXS2 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC65Q8IXS2 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC65Q8IXS2 Z98882.1-201ENST00000622160 2253 ntBASIC23.56■■□□□ 1.36
CCDC65Q8IXS2 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC65Q8IXS2 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
CCDC65Q8IXS2 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC23.56■■□□□ 1.36
CCDC65Q8IXS2 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC23.56■■□□□ 1.36
CCDC65Q8IXS2 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC65Q8IXS2 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC65Q8IXS2 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC65Q8IXS2 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC23.55■■□□□ 1.36
CCDC65Q8IXS2 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC65Q8IXS2 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC65Q8IXS2 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC23.55■■□□□ 1.36
CCDC65Q8IXS2 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC23.55■■□□□ 1.36
CCDC65Q8IXS2 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC23.55■■□□□ 1.36
CCDC65Q8IXS2 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC23.55■■□□□ 1.36
CCDC65Q8IXS2 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC65Q8IXS2 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC65Q8IXS2 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms