Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NUDCD3Q8IVD9 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NUDCD3Q8IVD9 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NUDCD3Q8IVD9 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.08■□□□□ 0.97
NUDCD3Q8IVD9 LINC01006-201ENST00000333319 2292 ntBASIC21.08■□□□□ 0.97
NUDCD3Q8IVD9 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NUDCD3Q8IVD9 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NUDCD3Q8IVD9 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NUDCD3Q8IVD9 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
NUDCD3Q8IVD9 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.08■□□□□ 0.97
NUDCD3Q8IVD9 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.08■□□□□ 0.97
NUDCD3Q8IVD9 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NUDCD3Q8IVD9 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NUDCD3Q8IVD9 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NUDCD3Q8IVD9 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.08■□□□□ 0.96
NUDCD3Q8IVD9 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NUDCD3Q8IVD9 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.08■□□□□ 0.96
NUDCD3Q8IVD9 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NUDCD3Q8IVD9 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
NUDCD3Q8IVD9 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.08■□□□□ 0.96
NUDCD3Q8IVD9 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NUDCD3Q8IVD9 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.07■□□□□ 0.96
NUDCD3Q8IVD9 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
NUDCD3Q8IVD9 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.07■□□□□ 0.96
NUDCD3Q8IVD9 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NUDCD3Q8IVD9 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.07■□□□□ 0.96
NUDCD3Q8IVD9 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.07■□□□□ 0.96
NUDCD3Q8IVD9 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NUDCD3Q8IVD9 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NUDCD3Q8IVD9 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.07■□□□□ 0.96
NUDCD3Q8IVD9 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.07■□□□□ 0.96
NUDCD3Q8IVD9 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NUDCD3Q8IVD9 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NUDCD3Q8IVD9 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.06■□□□□ 0.96
NUDCD3Q8IVD9 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.06■□□□□ 0.96
NUDCD3Q8IVD9 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NUDCD3Q8IVD9 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NUDCD3Q8IVD9 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NUDCD3Q8IVD9 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.06■□□□□ 0.96
NUDCD3Q8IVD9 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NUDCD3Q8IVD9 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.06■□□□□ 0.96
NUDCD3Q8IVD9 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NUDCD3Q8IVD9 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NUDCD3Q8IVD9 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NUDCD3Q8IVD9 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NUDCD3Q8IVD9 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NUDCD3Q8IVD9 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
NUDCD3Q8IVD9 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.05■□□□□ 0.96
NUDCD3Q8IVD9 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NUDCD3Q8IVD9 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
NUDCD3Q8IVD9 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
NUDCD3Q8IVD9 TSPY9P-201ENST00000440215 945 ntBASIC21.05■□□□□ 0.96
NUDCD3Q8IVD9 TSPY11P-201ENST00000442607 1045 ntBASIC21.05■□□□□ 0.96
NUDCD3Q8IVD9 pRNA.6-201ENST00000610482 90 ntBASIC21.05■□□□□ 0.96
NUDCD3Q8IVD9 pRNA.5-201ENST00000612139 90 ntBASIC21.05■□□□□ 0.96
NUDCD3Q8IVD9 pRNA.11-201ENST00000618423 90 ntBASIC21.05■□□□□ 0.96
NUDCD3Q8IVD9 pRNA.13-201ENST00000619112 90 ntBASIC21.05■□□□□ 0.96
NUDCD3Q8IVD9 AC068587.7-201ENST00000641602 218 ntBASIC21.05■□□□□ 0.96
NUDCD3Q8IVD9 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NUDCD3Q8IVD9 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NUDCD3Q8IVD9 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.05■□□□□ 0.96
NUDCD3Q8IVD9 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NUDCD3Q8IVD9 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NUDCD3Q8IVD9 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.04■□□□□ 0.96
NUDCD3Q8IVD9 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
NUDCD3Q8IVD9 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NUDCD3Q8IVD9 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
NUDCD3Q8IVD9 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NUDCD3Q8IVD9 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NUDCD3Q8IVD9 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.04■□□□□ 0.96
NUDCD3Q8IVD9 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
NUDCD3Q8IVD9 AL049796.1-201ENST00000565336 1766 ntBASIC21.04■□□□□ 0.96
NUDCD3Q8IVD9 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
NUDCD3Q8IVD9 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NUDCD3Q8IVD9 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.04■□□□□ 0.96
NUDCD3Q8IVD9 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 FEM1AP1-201ENST00000431297 1995 ntBASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NUDCD3Q8IVD9 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms