Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.23■□□□□ 0.99
LDB1Q86U70 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LDB1Q86U70 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21.23■□□□□ 0.99
LDB1Q86U70 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LDB1Q86U70 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
LDB1Q86U70 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.23■□□□□ 0.99
LDB1Q86U70 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.22■□□□□ 0.99
LDB1Q86U70 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.22■□□□□ 0.99
LDB1Q86U70 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.22■□□□□ 0.99
LDB1Q86U70 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
LDB1Q86U70 AC005229.4-201ENST00000610085 2198 ntBASIC21.22■□□□□ 0.99
LDB1Q86U70 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
LDB1Q86U70 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
LDB1Q86U70 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.22■□□□□ 0.99
LDB1Q86U70 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LDB1Q86U70 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.22■□□□□ 0.99
LDB1Q86U70 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
LDB1Q86U70 AF106564.1-201ENST00000607058 2553 ntBASIC21.22■□□□□ 0.99
LDB1Q86U70 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LDB1Q86U70 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LDB1Q86U70 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LDB1Q86U70 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LDB1Q86U70 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
LDB1Q86U70 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
LDB1Q86U70 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.21■□□□□ 0.99
LDB1Q86U70 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
LDB1Q86U70 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LDB1Q86U70 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
LDB1Q86U70 AC105265.2-201ENST00000467189 838 ntBASIC21.21■□□□□ 0.99
LDB1Q86U70 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LDB1Q86U70 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.21■□□□□ 0.99
LDB1Q86U70 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.21■□□□□ 0.99
LDB1Q86U70 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.21■□□□□ 0.99
LDB1Q86U70 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
LDB1Q86U70 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LDB1Q86U70 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LDB1Q86U70 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
LDB1Q86U70 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
LDB1Q86U70 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LDB1Q86U70 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.2■□□□□ 0.98
LDB1Q86U70 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LDB1Q86U70 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
LDB1Q86U70 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LDB1Q86U70 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LDB1Q86U70 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.2■□□□□ 0.98
LDB1Q86U70 AC104564.3-201ENST00000582367 638 ntBASIC21.2■□□□□ 0.98
LDB1Q86U70 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LDB1Q86U70 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
LDB1Q86U70 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LDB1Q86U70 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LDB1Q86U70 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LDB1Q86U70 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LDB1Q86U70 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.2■□□□□ 0.98
LDB1Q86U70 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LDB1Q86U70 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LDB1Q86U70 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LDB1Q86U70 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.19■□□□□ 0.98
LDB1Q86U70 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
LDB1Q86U70 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.19■□□□□ 0.98
LDB1Q86U70 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LDB1Q86U70 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
LDB1Q86U70 MIR6084-201ENST00000622012 110 ntBASIC21.19■□□□□ 0.98
LDB1Q86U70 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
LDB1Q86U70 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LDB1Q86U70 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LDB1Q86U70 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LDB1Q86U70 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LDB1Q86U70 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.18■□□□□ 0.98
LDB1Q86U70 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
LDB1Q86U70 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
LDB1Q86U70 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.18■□□□□ 0.98
LDB1Q86U70 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
LDB1Q86U70 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
LDB1Q86U70 BX005040.4-201ENST00000637145 1518 ntBASIC21.18■□□□□ 0.98
LDB1Q86U70 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.18■□□□□ 0.98
LDB1Q86U70 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.18■□□□□ 0.98
LDB1Q86U70 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LDB1Q86U70 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LDB1Q86U70 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LDB1Q86U70 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.17■□□□□ 0.98
LDB1Q86U70 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.17■□□□□ 0.98
LDB1Q86U70 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LDB1Q86U70 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LDB1Q86U70 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LDB1Q86U70 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.17■□□□□ 0.98
LDB1Q86U70 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.17■□□□□ 0.98
LDB1Q86U70 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC21.17■□□□□ 0.98
LDB1Q86U70 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.17■□□□□ 0.98
LDB1Q86U70 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
LDB1Q86U70 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LDB1Q86U70 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.17■□□□□ 0.98
LDB1Q86U70 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.17■□□□□ 0.98
LDB1Q86U70 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.17■□□□□ 0.98
LDB1Q86U70 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LDB1Q86U70 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.17■□□□□ 0.98
LDB1Q86U70 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LDB1Q86U70 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.16■□□□□ 0.98
LDB1Q86U70 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LDB1Q86U70 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.16■□□□□ 0.98
LDB1Q86U70 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms