Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 CNN2P6-201ENST00000439038 900 ntBASIC20.41■□□□□ 0.86
COL28A1Q2UY09 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 MYCNOS-205ENST00000641950 531 ntBASIC20.41■□□□□ 0.86
COL28A1Q2UY09 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL28A1Q2UY09 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL28A1Q2UY09 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL28A1Q2UY09 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
COL28A1Q2UY09 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
COL28A1Q2UY09 MIPEPP3-201ENST00000412105 444 ntBASIC20.4■□□□□ 0.86
COL28A1Q2UY09 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL28A1Q2UY09 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.4■□□□□ 0.86
COL28A1Q2UY09 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL28A1Q2UY09 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.4■□□□□ 0.86
COL28A1Q2UY09 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.4■□□□□ 0.86
COL28A1Q2UY09 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
COL28A1Q2UY09 AC006058.3-201ENST00000606217 1069 ntBASIC20.4■□□□□ 0.86
COL28A1Q2UY09 FP325331.1-202ENST00000623531 1380 ntBASIC20.4■□□□□ 0.86
COL28A1Q2UY09 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL28A1Q2UY09 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL28A1Q2UY09 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL28A1Q2UY09 AL353803.4-201ENST00000565882 1934 ntBASIC20.39■□□□□ 0.86
COL28A1Q2UY09 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
COL28A1Q2UY09 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
COL28A1Q2UY09 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
COL28A1Q2UY09 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL28A1Q2UY09 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL28A1Q2UY09 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.39■□□□□ 0.85
COL28A1Q2UY09 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.39■□□□□ 0.85
COL28A1Q2UY09 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.39■□□□□ 0.85
COL28A1Q2UY09 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
COL28A1Q2UY09 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL28A1Q2UY09 DUSP8P5-201ENST00000422884 1815 ntBASIC20.39■□□□□ 0.85
COL28A1Q2UY09 LINC01529-204ENST00000636474 1715 ntBASIC20.39■□□□□ 0.85
COL28A1Q2UY09 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL28A1Q2UY09 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.38■□□□□ 0.85
COL28A1Q2UY09 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL28A1Q2UY09 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL28A1Q2UY09 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.38■□□□□ 0.85
COL28A1Q2UY09 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.38■□□□□ 0.85
COL28A1Q2UY09 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.38■□□□□ 0.85
COL28A1Q2UY09 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.38■□□□□ 0.85
COL28A1Q2UY09 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.38■□□□□ 0.85
COL28A1Q2UY09 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.38■□□□□ 0.85
COL28A1Q2UY09 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL28A1Q2UY09 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.38■□□□□ 0.85
COL28A1Q2UY09 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL28A1Q2UY09 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.38■□□□□ 0.85
COL28A1Q2UY09 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL28A1Q2UY09 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL28A1Q2UY09 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL28A1Q2UY09 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
COL28A1Q2UY09 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
COL28A1Q2UY09 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
COL28A1Q2UY09 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL28A1Q2UY09 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL28A1Q2UY09 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.37■□□□□ 0.85
COL28A1Q2UY09 AC128676.1-201ENST00000454392 318 ntBASIC20.37■□□□□ 0.85
COL28A1Q2UY09 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL28A1Q2UY09 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.37■□□□□ 0.85
COL28A1Q2UY09 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.37■□□□□ 0.85
COL28A1Q2UY09 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.37■□□□□ 0.85
COL28A1Q2UY09 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.37■□□□□ 0.85
COL28A1Q2UY09 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL28A1Q2UY09 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
COL28A1Q2UY09 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL28A1Q2UY09 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL28A1Q2UY09 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.36■□□□□ 0.85
COL28A1Q2UY09 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL28A1Q2UY09 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL28A1Q2UY09 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.36■□□□□ 0.85
COL28A1Q2UY09 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
COL28A1Q2UY09 AC008550.1-201ENST00000511500 884 ntBASIC20.36■□□□□ 0.85
COL28A1Q2UY09 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.36■□□□□ 0.85
COL28A1Q2UY09 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
COL28A1Q2UY09 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL28A1Q2UY09 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
COL28A1Q2UY09 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.36■□□□□ 0.85
COL28A1Q2UY09 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.36■□□□□ 0.85
COL28A1Q2UY09 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.36■□□□□ 0.85
COL28A1Q2UY09 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
COL28A1Q2UY09 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms