Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 ARF2YDL137W 546 nt4.9□□□□□ -1.63
UBP3Q01477 YGR161W-CYGR161W-C 279 nt4.9□□□□□ -1.63
UBP3Q01477 TPM1YNL079C 600 nt4.9□□□□□ -1.63
UBP3Q01477 RAD28YDR030C 1521 nt4.9□□□□□ -1.63 RIP-Chip
UBP3Q01477 RNA14YMR061W 2034 nt4.9□□□□□ -1.63 RIP-Chip
UBP3Q01477 CRT10YOL063C 2874 nt4.9□□□□□ -1.63
UBP3Q01477 CBF5YLR175W 1452 nt4.89□□□□□ -1.63 RIP-Chip
UBP3Q01477 JJJ1YNL227C 1773 nt4.89□□□□□ -1.63
UBP3Q01477 RSC3YDR303C 2658 nt4.89□□□□□ -1.63 RIP-Chip
UBP3Q01477 DPP1YDR284C 870 nt4.89□□□□□ -1.63
UBP3Q01477 APA2YDR530C 978 nt4.89□□□□□ -1.63
UBP3Q01477 YER076CYER076C 909 nt4.89□□□□□ -1.63
UBP3Q01477 SPI1YER150W 447 nt4.89□□□□□ -1.63
UBP3Q01477 YIL024CYIL024C 570 nt4.89□□□□□ -1.63 RIP-Chip
UBP3Q01477 RSM25YIL093C 795 nt4.89□□□□□ -1.63
UBP3Q01477 MAK16YAL025C 921 nt4.89□□□□□ -1.63
UBP3Q01477 SWC7YLR385C 399 nt4.89□□□□□ -1.63
UBP3Q01477 YLR428CYLR428C 345 nt4.89□□□□□ -1.63
UBP3Q01477 YPR148CYPR148C 1308 nt4.89□□□□□ -1.63
UBP3Q01477 ZPR1YGR211W 1461 nt4.88□□□□□ -1.63
UBP3Q01477 YDR261C-DYDR261C-D 4815 nt4.88□□□□□ -1.63
UBP3Q01477 RIM21YNL294C 1602 nt4.88□□□□□ -1.63
UBP3Q01477 MSW1YDR268W 1140 nt4.88□□□□□ -1.63
UBP3Q01477 LOC1YFR001W 615 nt4.88□□□□□ -1.63
UBP3Q01477 YLR050CYLR050C 486 nt4.88□□□□□ -1.63
UBP3Q01477 IMP1YMR150C 573 nt4.88□□□□□ -1.63 RIP-Chip
UBP3Q01477 YOR199WYOR199W 330 nt4.88□□□□□ -1.63
UBP3Q01477 MPS3YJL019W 2049 nt4.88□□□□□ -1.63
UBP3Q01477 FAA1YOR317W 2103 nt4.88□□□□□ -1.63
UBP3Q01477 CTT1YGR088W 1689 nt4.87□□□□□ -1.63
UBP3Q01477 DAD1YDR016C 285 nt4.87□□□□□ -1.63
UBP3Q01477 ARG82YDR173C 1068 nt4.87□□□□□ -1.63 RIP-Chip
UBP3Q01477 SNA2YDR525W-A 240 nt4.87□□□□□ -1.63
UBP3Q01477 THO1YER063W 657 nt4.87□□□□□ -1.63 RIP-Chip
UBP3Q01477 MAG1YER142C 891 nt4.87□□□□□ -1.63 RIP-Chip
UBP3Q01477 RMR1YGL250W 726 nt4.87□□□□□ -1.63
UBP3Q01477 MRPL9YGR220C 810 nt4.87□□□□□ -1.63
UBP3Q01477 FUR1YHR128W 651 nt4.87□□□□□ -1.63
UBP3Q01477 SRP40YKR092C 1221 nt4.87□□□□□ -1.63
UBP3Q01477 GLO1YML004C 981 nt4.87□□□□□ -1.63
UBP3Q01477 CIT1YNR001C 1440 nt4.87□□□□□ -1.63
UBP3Q01477 ISW2YOR304W 3363 nt4.87□□□□□ -1.63
UBP3Q01477 RDH54YBR073W 2877 nt4.86□□□□□ -1.63 RIP-Chip
UBP3Q01477 AKL1YBR059C 3327 nt4.86□□□□□ -1.63
UBP3Q01477 ULP1YPL020C 1866 nt4.86□□□□□ -1.63 RIP-Chip
UBP3Q01477 GEM1YAL048C 1989 nt4.86□□□□□ -1.63
UBP3Q01477 UBP12YJL197W 3765 nt4.86□□□□□ -1.63
UBP3Q01477 MPC3YGR243W 441 nt4.86□□□□□ -1.63
UBP3Q01477 YIL171W-AYIL171W-A 453 nt4.86□□□□□ -1.63
UBP3Q01477 YJL220WYJL220W 453 nt4.86□□□□□ -1.63
UBP3Q01477 VPH2YKL119C 648 nt4.86□□□□□ -1.63
UBP3Q01477 IST1YNL265C 897 nt4.86□□□□□ -1.63
UBP3Q01477 SIL1YOL031C 1266 nt4.86□□□□□ -1.63
UBP3Q01477 GRX7YBR014C 612 nt4.86□□□□□ -1.63
UBP3Q01477 CBP3YPL215W 1008 nt4.86□□□□□ -1.63
UBP3Q01477 AVT5YBL089W 1380 nt4.86□□□□□ -1.63 RIP-Chip
UBP3Q01477 NOP12YOL041C 1380 nt4.86□□□□□ -1.63
UBP3Q01477 NOP56YLR197W 1515 nt4.86□□□□□ -1.63 RIP-Chip
UBP3Q01477 ALG6YOR002W 1635 nt4.86□□□□□ -1.63 RIP-Chip
UBP3Q01477 GSM1YJL103C 1857 nt4.86□□□□□ -1.63 RIP-Chip
UBP3Q01477 GCD2YGR083C 1956 nt4.85□□□□□ -1.63
UBP3Q01477 ENP2YGR145W 2124 nt4.85□□□□□ -1.63
UBP3Q01477 SAP4YGL229C 2457 nt4.85□□□□□ -1.63
UBP3Q01477 TIF4632YGL049C 2745 nt4.85□□□□□ -1.63
UBP3Q01477 FIN1YDR130C 876 nt4.85□□□□□ -1.63
UBP3Q01477 YIP1YGR172C 747 nt4.85□□□□□ -1.63 RIP-Chip
UBP3Q01477 DSE2YHR143W 978 nt4.85□□□□□ -1.63
UBP3Q01477 CFD1YIL003W 882 nt4.85□□□□□ -1.63 RIP-Chip
UBP3Q01477 YAR047CYAR047C 321 nt4.85□□□□□ -1.63
UBP3Q01477 RDN58-1RDN58-1 158 nt4.85□□□□□ -1.63
UBP3Q01477 RDN58-2RDN58-2 158 nt4.85□□□□□ -1.63
UBP3Q01477 YML084WYML084W 309 nt4.85□□□□□ -1.63
UBP3Q01477 UBX4YMR067C 1251 nt4.85□□□□□ -1.63
UBP3Q01477 CTP1YBR291C 900 nt4.85□□□□□ -1.63
UBP3Q01477 MON1YGL124C 1935 nt4.85□□□□□ -1.63
UBP3Q01477 NGG1YDR176W 2109 nt4.84□□□□□ -1.63 RIP-Chip
UBP3Q01477 GRC3YLL035W 1899 nt4.84□□□□□ -1.63
UBP3Q01477 APC1YNL172W 5247 nt4.84□□□□□ -1.63
UBP3Q01477 IES5YER092W 378 nt4.84□□□□□ -1.63
UBP3Q01477 YHL002C-AYHL002C-A 489 nt4.84□□□□□ -1.63
UBP3Q01477 YAP5YIR018W 738 nt4.84□□□□□ -1.63
UBP3Q01477 YJR038CYJR038C 363 nt4.84□□□□□ -1.63
UBP3Q01477 PAM18YLR008C 507 nt4.84□□□□□ -1.63 RIP-Chip
UBP3Q01477 YLR101CYLR101C 396 nt4.84□□□□□ -1.63
UBP3Q01477 YMR254CYMR254C 309 nt4.84□□□□□ -1.63
UBP3Q01477 ATG3YNR007C 933 nt4.84□□□□□ -1.63
UBP3Q01477 BUD5YCR038C 1929 nt4.84□□□□□ -1.64 RIP-Chip
UBP3Q01477 YEH2YLR020C 1617 nt4.83□□□□□ -1.64
UBP3Q01477 RMD6YEL072W 696 nt4.83□□□□□ -1.64
UBP3Q01477 MIG3YER028C 1185 nt4.83□□□□□ -1.64
UBP3Q01477 COA3YJL062W-A 258 nt4.83□□□□□ -1.64
UBP3Q01477 YLR290CYLR290C 834 nt4.83□□□□□ -1.64
UBP3Q01477 ATP11YNL315C 957 nt4.83□□□□□ -1.64
UBP3Q01477 SWM2YNR004W 441 nt4.83□□□□□ -1.64
UBP3Q01477 CIN5YOR028C 888 nt4.83□□□□□ -1.64
UBP3Q01477 DDP1YOR163W 567 nt4.83□□□□□ -1.64
UBP3Q01477 PIN3YPR154W 648 nt4.83□□□□□ -1.64
UBP3Q01477 ADF1YCL058W-A 342 nt4.83□□□□□ -1.64
UBP3Q01477 YPS7YDR349C 1791 nt4.83□□□□□ -1.64 RIP-Chip
UBP3Q01477 YOL075CYOL075C 3885 nt4.83□□□□□ -1.64
Retrieved 100 of 7,029 protein–RNA pairs in 15.4 ms