Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF4P78317 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
RNF4P78317 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RNF4P78317 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF4P78317 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.71■□□□□ 0.75
RNF4P78317 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF4P78317 AC003102.1-202ENST00000563394 1796 ntBASIC19.71■□□□□ 0.75
RNF4P78317 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF4P78317 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF4P78317 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF4P78317 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF4P78317 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF4P78317 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
RNF4P78317 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF4P78317 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF4P78317 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF4P78317 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF4P78317 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.7■□□□□ 0.74
RNF4P78317 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
RNF4P78317 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.7■□□□□ 0.74
RNF4P78317 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF4P78317 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
RNF4P78317 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF4P78317 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
RNF4P78317 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF4P78317 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
RNF4P78317 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
RNF4P78317 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
RNF4P78317 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF4P78317 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.69■□□□□ 0.74
RNF4P78317 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.69■□□□□ 0.74
RNF4P78317 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.69■□□□□ 0.74
RNF4P78317 EEF1DP3-203ENST00000566025 782 ntBASIC19.69■□□□□ 0.74
RNF4P78317 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
RNF4P78317 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF4P78317 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF4P78317 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
RNF4P78317 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
RNF4P78317 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNF4P78317 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNF4P78317 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
RNF4P78317 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
RNF4P78317 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNF4P78317 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.68■□□□□ 0.74
RNF4P78317 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNF4P78317 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
RNF4P78317 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNF4P78317 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.68■□□□□ 0.74
RNF4P78317 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.68■□□□□ 0.74
RNF4P78317 AC053503.5-201ENST00000601508 636 ntBASIC19.68■□□□□ 0.74
RNF4P78317 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNF4P78317 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
RNF4P78317 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
RNF4P78317 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNF4P78317 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.67■□□□□ 0.74
RNF4P78317 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNF4P78317 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNF4P78317 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNF4P78317 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNF4P78317 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
RNF4P78317 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.67■□□□□ 0.74
RNF4P78317 IKBKGP1-201ENST00000612193 1073 ntBASIC19.67■□□□□ 0.74
RNF4P78317 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNF4P78317 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
RNF4P78317 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.67■□□□□ 0.74
RNF4P78317 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
RNF4P78317 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNF4P78317 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RNF4P78317 AC010542.4-201ENST00000563151 1910 ntBASIC19.66■□□□□ 0.74
RNF4P78317 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RNF4P78317 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RNF4P78317 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RNF4P78317 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RNF4P78317 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RNF4P78317 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RNF4P78317 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
RNF4P78317 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RNF4P78317 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.66■□□□□ 0.74
RNF4P78317 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RNF4P78317 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.66■□□□□ 0.74
RNF4P78317 AC137761.2-201ENST00000561729 223 ntBASIC19.66■□□□□ 0.74
RNF4P78317 AC145350.3-201ENST00000569033 163 ntBASIC19.66■□□□□ 0.74
RNF4P78317 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.66■□□□□ 0.74
RNF4P78317 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
RNF4P78317 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RNF4P78317 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RNF4P78317 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RNF4P78317 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RNF4P78317 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RNF4P78317 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RNF4P78317 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RNF4P78317 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
RNF4P78317 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.65■□□□□ 0.74
RNF4P78317 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
RNF4P78317 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.65■□□□□ 0.74
RNF4P78317 AC138907.5-202ENST00000569484 235 ntBASIC19.65■□□□□ 0.74
RNF4P78317 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.65■□□□□ 0.74
RNF4P78317 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
RNF4P78317 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.65■□□□□ 0.74
RNF4P78317 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms