Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
RPS28P62857 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RPS28P62857 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RPS28P62857 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RPS28P62857 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
RPS28P62857 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC12.48□□□□□ -0.41
RPS28P62857 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RPS28P62857 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RPS28P62857 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
RPS28P62857 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
RPS28P62857 BID-204ENST00000399767 2129 ntTSL 2 BASIC12.48□□□□□ -0.41
RPS28P62857 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC12.48□□□□□ -0.41
RPS28P62857 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
RPS28P62857 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC12.48□□□□□ -0.41
RPS28P62857 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RPS28P62857 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RPS28P62857 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RPS28P62857 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC12.48□□□□□ -0.41
RPS28P62857 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC12.48□□□□□ -0.41
RPS28P62857 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC12.48□□□□□ -0.41
RPS28P62857 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
RPS28P62857 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
RPS28P62857 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
RPS28P62857 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RPS28P62857 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RPS28P62857 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RPS28P62857 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC12.48□□□□□ -0.41
RPS28P62857 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC12.47□□□□□ -0.41
RPS28P62857 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
RPS28P62857 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC12.47□□□□□ -0.41
RPS28P62857 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
RPS28P62857 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
RPS28P62857 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
RPS28P62857 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC12.47□□□□□ -0.41
RPS28P62857 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
RPS28P62857 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC12.47□□□□□ -0.41
RPS28P62857 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC12.47□□□□□ -0.41
RPS28P62857 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
RPS28P62857 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
RPS28P62857 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
RPS28P62857 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
RPS28P62857 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
RPS28P62857 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC12.47□□□□□ -0.41
RPS28P62857 GCA-201ENST00000233612 1694 ntTSL 2 BASIC12.47□□□□□ -0.41
RPS28P62857 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
RPS28P62857 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
RPS28P62857 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
RPS28P62857 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC12.47□□□□□ -0.41
RPS28P62857 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC12.47□□□□□ -0.41
RPS28P62857 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
RPS28P62857 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
RPS28P62857 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
RPS28P62857 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.41
RPS28P62857 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
RPS28P62857 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
RPS28P62857 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
RPS28P62857 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
RPS28P62857 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
RPS28P62857 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
RPS28P62857 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
RPS28P62857 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
RPS28P62857 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC12.46□□□□□ -0.41
RPS28P62857 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
RPS28P62857 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
RPS28P62857 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC12.46□□□□□ -0.42
RPS28P62857 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
RPS28P62857 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
RPS28P62857 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC12.46□□□□□ -0.42
RPS28P62857 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC12.46□□□□□ -0.42
RPS28P62857 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC12.46□□□□□ -0.42
RPS28P62857 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
RPS28P62857 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.42
RPS28P62857 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
RPS28P62857 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
RPS28P62857 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
RPS28P62857 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC12.45□□□□□ -0.42
RPS28P62857 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
RPS28P62857 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
RPS28P62857 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
RPS28P62857 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
RPS28P62857 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
RPS28P62857 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
RPS28P62857 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
RPS28P62857 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC12.45□□□□□ -0.42
RPS28P62857 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC12.45□□□□□ -0.42
RPS28P62857 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
RPS28P62857 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
RPS28P62857 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
RPS28P62857 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
RPS28P62857 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
RPS28P62857 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
RPS28P62857 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
RPS28P62857 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
RPS28P62857 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC12.44□□□□□ -0.42
RPS28P62857 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
RPS28P62857 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
RPS28P62857 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
RPS28P62857 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC12.44□□□□□ -0.42
RPS28P62857 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
RPS28P62857 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms