Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC24.73■■□□□ 1.55
HMGCS2P54868 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
HMGCS2P54868 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
HMGCS2P54868 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC24.72■■□□□ 1.55
HMGCS2P54868 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
HMGCS2P54868 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
HMGCS2P54868 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
HMGCS2P54868 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
HMGCS2P54868 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC24.72■■□□□ 1.55
HMGCS2P54868 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC24.72■■□□□ 1.55
HMGCS2P54868 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC24.72■■□□□ 1.55
HMGCS2P54868 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC24.72■■□□□ 1.55
HMGCS2P54868 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC24.72■■□□□ 1.55
HMGCS2P54868 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC24.72■■□□□ 1.55
HMGCS2P54868 AC008687.6-201ENST00000596318 630 ntBASIC24.72■■□□□ 1.55
HMGCS2P54868 GCA-201ENST00000233612 1694 ntTSL 2 BASIC24.72■■□□□ 1.55
HMGCS2P54868 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
HMGCS2P54868 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC24.71■■□□□ 1.55
HMGCS2P54868 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC24.71■■□□□ 1.55
HMGCS2P54868 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
HMGCS2P54868 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC24.71■■□□□ 1.55
HMGCS2P54868 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC24.71■■□□□ 1.55
HMGCS2P54868 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
HMGCS2P54868 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
HMGCS2P54868 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC24.71■■□□□ 1.55
HMGCS2P54868 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC24.71■■□□□ 1.55
HMGCS2P54868 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC24.7■■□□□ 1.55
HMGCS2P54868 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
HMGCS2P54868 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
HMGCS2P54868 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC24.7■■□□□ 1.54
HMGCS2P54868 AL512625.2-201ENST00000417533 625 ntBASIC24.7■■□□□ 1.54
HMGCS2P54868 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC24.7■■□□□ 1.54
HMGCS2P54868 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC24.7■■□□□ 1.54
HMGCS2P54868 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC24.7■■□□□ 1.54
HMGCS2P54868 AC092118.2-201ENST00000613495 667 ntBASIC24.7■■□□□ 1.54
HMGCS2P54868 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC24.7■■□□□ 1.54
HMGCS2P54868 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
HMGCS2P54868 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC24.69■■□□□ 1.54
HMGCS2P54868 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
HMGCS2P54868 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
HMGCS2P54868 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
HMGCS2P54868 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC24.69■■□□□ 1.54
HMGCS2P54868 BX276092.2-201ENST00000417668 665 ntBASIC24.69■■□□□ 1.54
HMGCS2P54868 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
HMGCS2P54868 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
HMGCS2P54868 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC24.69■■□□□ 1.54
HMGCS2P54868 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC24.69■■□□□ 1.54
HMGCS2P54868 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC24.69■■□□□ 1.54
HMGCS2P54868 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC24.69■■□□□ 1.54
HMGCS2P54868 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
HMGCS2P54868 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC24.69■■□□□ 1.54
HMGCS2P54868 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
HMGCS2P54868 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
HMGCS2P54868 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
HMGCS2P54868 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC24.68■■□□□ 1.54
HMGCS2P54868 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
HMGCS2P54868 AC139530.1-201ENST00000575312 1977 ntBASIC24.68■■□□□ 1.54
HMGCS2P54868 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC24.68■■□□□ 1.54
HMGCS2P54868 POU5F1P4-201ENST00000413175 1085 ntBASIC24.68■■□□□ 1.54
HMGCS2P54868 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC24.68■■□□□ 1.54
HMGCS2P54868 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC24.68■■□□□ 1.54
HMGCS2P54868 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC24.68■■□□□ 1.54
HMGCS2P54868 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC24.68■■□□□ 1.54
HMGCS2P54868 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC24.68■■□□□ 1.54
HMGCS2P54868 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC24.68■■□□□ 1.54
HMGCS2P54868 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
HMGCS2P54868 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
HMGCS2P54868 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
HMGCS2P54868 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC24.67■■□□□ 1.54
HMGCS2P54868 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC24.67■■□□□ 1.54
HMGCS2P54868 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC24.67■■□□□ 1.54
HMGCS2P54868 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
HMGCS2P54868 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
HMGCS2P54868 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC24.67■■□□□ 1.54
HMGCS2P54868 FGF8-207ENST00000618991 856 ntTSL 3 BASIC24.67■■□□□ 1.54
HMGCS2P54868 ITM2C-210ENST00000620962 501 ntBASIC24.67■■□□□ 1.54
HMGCS2P54868 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
HMGCS2P54868 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
HMGCS2P54868 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC24.67■■□□□ 1.54
HMGCS2P54868 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
HMGCS2P54868 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
HMGCS2P54868 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
HMGCS2P54868 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC24.66■■□□□ 1.54
HMGCS2P54868 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
HMGCS2P54868 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
HMGCS2P54868 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC24.66■■□□□ 1.54
HMGCS2P54868 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC24.66■■□□□ 1.54
HMGCS2P54868 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
HMGCS2P54868 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
HMGCS2P54868 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
HMGCS2P54868 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
HMGCS2P54868 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
HMGCS2P54868 COMT-203ENST00000403184 2217 ntTSL 2 BASIC24.65■■□□□ 1.54
HMGCS2P54868 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
HMGCS2P54868 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC24.65■■□□□ 1.54
HMGCS2P54868 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC24.65■■□□□ 1.54
HMGCS2P54868 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
HMGCS2P54868 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC24.65■■□□□ 1.54
HMGCS2P54868 DET1-205ENST00000558413 583 ntTSL 4 BASIC24.65■■□□□ 1.54
HMGCS2P54868 AC083880.1-201ENST00000608266 535 ntBASIC24.65■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms